LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g0762	ATGGGTCGCGGAAAATTGGCGATGAAGCTCATTGAGAAGGAGAAATCAAGAAAAGCAACATTTTACAAGAGAAAGAATGGAATAATTAAAAAAGCTCATGAACTTTCCACACTGTGTGGAGTTGATTCTTGTGTGATCGTCTTCAACCCAAACTCTAACGATCATCGTCCAGAAATTTGGCCTCGAGATCCCAAAGAGGTACACCGAATCCTTGAGAAGTATGAGGCCAAGATTGCAGTGAAAAGCTCCAAGAAGTACGACGTGTTAGAGTTCTTCAAGGACAGGAAGAACAAGGTGGAAGCTGAAGTTTGCAAGCTTCAAAAGGAAAGGCTGAAAATGTTGTATCCGACATGGGACACCAGTTTCGACAAAGTTGGAGAGGATCAGCTGAGGATATTTCTCTCTTTGTTGGATGCTAAGATTGAAGATTGCAAACAGAAAATTAAGGTGTTGAAGATGAAGCCATACCTCAAGGAAAAAGGAGCAGAATCATCAGACCTGGGTTCAAGCAGAAGCCAACTCGTCAGTTTCATGCAGAAGAACACTCCACAACCCCAAGATTTTTCAAAGCCTCATCAGATAATGCTTCCCTTTGATTCAAATCTGATGCATTTGATGGTAACACAGAACGATACCCCCGCAAGCAATGGTGCTTTTGGTTCTTATGATCCAAGATATCATGGAGGAGAAGCTAGAAATTACACAGATTCTTCTTCTTCTTCATGCTATTACAATAATAACTACTATCCTTCTCTGCAGAAATTTCCCGCACAGAATACTGTCGTGCAGTATCATCATGAAGCAAATTTGCAGACCCTCCCACCTCTGATGATGCAAGGATTTCAGACAGATTATGGATACTATCATGATTTAATTCAAGCTCATCAGATGTTCAACTATATGGACACGAAAAAGTAG	918	0.4085	MGRGKLAMKLIEKEKSRKATFYKRKNGIIKKAHELSTLCGVDSCVIVFNPNSNDHRPEIWPRDPKEVHRILEKYEAKIAVKSSKKYDVLEFFKDRKNKVEAEVCKLQKERLKMLYPTWDTSFDKVGEDQLRIFLSLLDAKIEDCKQKIKVLKMKPYLKEKGAESSDLGSSRSQLVSFMQKNTPQPQDFSKPHQIMLPFDSNLMHLMVTQNDTPASNGAFGSYDPRYHGGEARNYTDSSSSSCYYNNNYYPSLQKFPAQNTVVQYHHEANLQTLPPLMMQGFQTDYGYYHDLIQAHQMFNYMDTKK	305

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g0762	305	ProSiteProfiles	MADS-box domain profile.	1	55	IPR002100	GO:0003677\|GO:0046983
	Dere11g0762	305	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Dere11g0762	305	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Dere11g0762	305	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Dere11g0762	305	SMART	madsneu2	1	62	IPR002100	GO:0003677\|GO:0046983
	Dere11g0762	305	SUPERFAMILY	SRF-like	2	85	IPR036879	GO:0003677\|GO:0046983
	Dere11g0762	305	CDD	MADS	2	53	-	-
	Dere11g0762	305	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	52	IPR002100	GO:0003677\|GO:0046983
	Dere11g0762	305	Coils	Coil	134	154	-	-
	Dere11g0762	305	Gene3D	-	13	98	IPR036879	GO:0003677\|GO:0046983
	Dere11g0762	305	PANTHER	MADS BOX PROTEIN	3	149	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g0762	Dere-ChrDere11	13646453	13647741	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g0762	1	143	Type I MADS-box Gene Family	AT5G55690	38.095	2.64e-25	100

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Dere11g0762		SRF-TF	9.3e-20	No_clan