Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0729 ATGGCTTCTCCACCTCCTTTAACGCTAGACGTCGTCGGATCGAACTCTTTCACCGGTAGTGGTGTGGAAGATGGTTCGTCTGAACACTACTCGTCTGCTTTGCAGAATCTCAACCCGAGCATTCTTGTTATCGTCATCGTCCTTGCTGTTACGGTTATCGTTTCGCTGCTTATTTGTTCACTGCTACGACACCTTAATCTGCCGTGTCTGCGTCGTATGTCTCAGTCGTCGTCGGCGAATGTATCGGGGAGTGCTGCAGCTACGACGCCTGTGTTCTCTTCCAGCCGCCGCGTCTCGCCGGAAATTCCTGCGTCTTCTGTCATTGACTCGCTGCCGCTGTTTACGTTTTCTTCAATTGCTCGCCGCTCGTCGTCCTCCGACGCCACCGGTGGTGACTGCGCCGTTTGCCTCTCGAAATTCGAGCAGCACGACCTCCTCCGCCTGCTCCCGCTCTGCTGCCATGCCTTCCACGCCGAGTGCATCGACACCTGGCTTCAGTCAAATCTCACCTGTCCGCTCTGCCGATCCTCCATTTTCGCCTCCGATTCCGACCTCATGAAGGTTCTACGATCGTCTTCTGCAGCCGGAGGCGGCGGAAGCGACAGTTTCCGGCTTGAAATTGGAAACATCAGCCACCGTGGAGCAGCGCCGGACGTCGCCGGAGATGCGCGTGCGAGGTCGAGGTCGAGGTCGAGGTCGTATTCAGTAGGATCGTTCGAATATTTTGTAGAGGACGACTTCGAGGTTCCTATCAGCCACGCGCACCGTAGGAGCGTGTCGGATAACAAGGACGAAGCAGTGGTCGTAGAATCTCAGGAGGCGGCTCAGCCGGTCCATGAGGCGAACTTAGCCGCCGACGTAGCAGTCAGTGGCCGGAGCTGGCTGAAGGAATATGTCGATAGGCTATCGTCCTCGATATCATCCCGAACGATGTCCTTTCGAAGCTCTGGAAGGTTCTTTACCGGTGGTGTCAGCCACCGCAGCGACACCTTCTCAGCCGAGGACTTCGACGTGGATGCCAACAGATTAGGAGAGGAAATCAGCGAAACATTTCGATGGCTCTCAGGGGTATAA 1074 0.5596 MASPPPLTLDVVGSNSFTGSGVEDGSSEHYSSALQNLNPSILVIVIVLAVTVIVSLLICSLLRHLNLPCLRRMSQSSSANVSGSAAATTPVFSSSRRVSPEIPASSVIDSLPLFTFSSIARRSSSSDATGGDCAVCLSKFEQHDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSSIFASDSDLMKVLRSSSAAGGGGSDSFRLEIGNISHRGAAPDVAGDARARSRSRSRSYSVGSFEYFVEDDFEVPISHAHRRSVSDNKDEAVVVESQEAAQPVHEANLAADVAVSGRSWLKEYVDRLSSSISSRTMSFRSSGRFFTGGVSHRSDTFSAEDFDVDANRLGEEISETFRWLSGV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0729 357 CDD RING-H2_EL5-like 132 175 - -
Dere11g0729 357 SUPERFAMILY RING/U-box 108 181 - -
Dere11g0729 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 184 IPR013083 -
Dere11g0729 357 FunFam E3 ubiquitin-protein ligase ATL6 92 181 - -
Dere11g0729 357 Pfam Ring finger domain 132 175 IPR001841 -
Dere11g0729 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 34 263 - -
Dere11g0729 357 SMART ring_2 133 174 IPR001841 -
Dere11g0729 357 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0729 Dere-ChrDere11 12831083 12832156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0729 106 246 C3H Transcription Factor Family AT2G18650 32.308 2.05e-21 92.8