Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0728 ATGCAGGGAAAAATAAATACATTATATAGTTTTGGGCCAGAAGCCCATAATGGCAAGCCCAGCTTGACGATTATTATACAGACCCATCGTAAAGTGAAGTATCAACCATTTCCTCGGAAGCACCAAACAACACACTCTGCATTGCAACCCTTCTTTTCCTTCACAGCCGATCGCTCTTCCTTCCTCTCTCTCTCTCCGACTCTGCGAGACCCGAGCGATCCGAGTCACATCATGTTCCGCCGCGCCACAAGCCTGCTGGGTCGACCTCTTCTGGCCGCGAGGTCTCGCTCTTTCTCGACGGATCTCCCCGCTGCTCCCACCGCCGATTCTAACTTCGTTGAAGCATGGAGGAAGGTCGTCCCTAACATGGAGCCACCCAAGACTCCGCTTTCGTTCATGCAGCCTCGCCCTCCTGCACCCTCTTCCATCCCCTCCAAGCTCACTGTCAATTTCGTACTACCTTACGCTTCGGAATTGTCAGGGAAAGAGGTTGACATGGTCATAGTGCCAGCAACAACTGGACAGATGGGTGTTCTTCCTGGACACGTAGCAACAATTGCAGAGTTGAAACCTGGACTTCTATCTGTGCATGAAGGGAATGAAGTGACCAAGTATTTTGTGAGCAGTGGCTTTGCTTTCATCCATGCAAACTCTGTTGCTGACATAATAGCAGTTGAGGCTGTGCCAATTGATCAAATTGACGCTACCCTTGTCCAAAAGGGTCTTCAAGAATTCACTCAGAAGCTGAGCTCAGCCACAACTGATTTGGAGAAAGCCGAAGCTCAAATTGGGGTTGATGTCCATAGCGCACTCAATGCTGCTCTTTCAGGCTAA 834 0.4988 MQGKINTLYSFGPEAHNGKPSLTIIIQTHRKVKYQPFPRKHQTTHSALQPFFSFTADRSSFLSLSPTLRDPSDPSHIMFRRATSLLGRPLLAARSRSFSTDLPAAPTADSNFVEAWRKVVPNMEPPKTPLSFMQPRPPAPSSIPSKLTVNFVLPYASELSGKEVDMVIVPATTGQMGVLPGHVATIAELKPGLLSVHEGNEVTKYFVSSGFAFIHANSVADIIAVEAVPIDQIDATLVQKGLQEFTQKLSSATTDLEKAEAQIGVDVHSALNAALSG 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0728 277 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 106 276 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dere11g0728 277 Hamap ATP synthase epsilon chain [atpC]. 145 265 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dere11g0728 277 Coils Coil 242 262 - -
Dere11g0728 277 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 147 219 IPR020546 GO:0015986
Dere11g0728 277 CDD F1-ATPase_delta 147 270 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dere11g0728 277 Gene3D - 141 234 IPR036771 -
Dere11g0728 277 FunFam ATP synthase delta 136 233 - -
Dere11g0728 277 Gene3D - 235 276 - -
Dere11g0728 277 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 147 228 IPR036771 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0728 Dere-ChrDere11 12778249 12782771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0728 78 277 Primary Pumps ATPases AT5G47030 74.146 3.63e-108 310
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g0728 11 12778249 12782771 Dere11g0728 11 12778249 12782771 ECH