Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0682 ATGAACGATGTGGTTTACACCTTGCTAGCTTTCTTGTTCGTAATCGCTATATGCAGCATCCTCACATTACTGTCCTACTTTTGCACCAAACAGCCCAACCCTGCGAGCCAATCTGATGGGGTTGATGGCAGTAACACTGTCACAGACTCGGACCAAAGAACACTGACAGTGGAGCCATGCATGGACCAAACTAGGGTTTGCAGATACCCCAAGCTTCTTTGCTCTTCGAAAGAGAAGATGTGCAGTAAGATAAGTACTTGTTCTTCTTCGAGCTCTTCTTCTTGCTGCTCCATATGCTTGATGGATTACAGTGAATCTGACCTCCTAAGAGTGTTGCCAGAATGCGGTCACTTTTTTCATGTGAAGTGTGTTGATCCTTGGTTCAAAATGCATCTAACTTGCCCTATTTGTAGAATGTCGGTGGTTTGA 429 0.4476 MNDVVYTLLAFLFVIAICSILTLLSYFCTKQPNPASQSDGVDGSNTVTDSDQRTLTVEPCMDQTRVCRYPKLLCSSKEKMCSKISTCSSSSSSSCCSICLMDYSESDLLRVLPECGHFFHVKCVDPWFKMHLTCPICRMSVV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0682 142 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Dere11g0682 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 142 IPR013083 -
Dere11g0682 142 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 141 IPR045899 -
Dere11g0682 142 SUPERFAMILY RING/U-box 91 141 - -
Dere11g0682 142 SMART ring_2 96 137 IPR001841 -
Dere11g0682 142 Pfam Ring finger domain 96 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0682 Dere-ChrDere11 11734828 11735256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0682 1 140 C3H Transcription Factor Family AT5G06490 35.032 8.49e-24 89.7