Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0660 ATGAATGTTTTCTTCACAAGCAACCTTACTTCAAGCCCTAACTGCGACAATGCTTCGCCGGAGCAGGGTGTTGGCGACCCCGGTGACGATGGTCGCACAATGTTTTCCGACGAGCAGGTTAACGCCATGAAACCAAGTGATTATAGGGCTAATACTAACAATGCAGCTGTGGCGGCGCGTGAAGGGAATGTGGGGCCACGTATATGGAGGAACTACCGTGGCGTGAGACGCCGGCCGTGGGGAAAGTTCGCTGCGGAGATCCGGGACCTGAAGAAGAACGGTGCAAGAATATGGCTGGGGACCTATGAGAGGGAGGAGGATGCAGCTTTGGCTTATGACAGAGCTGCTTTCCGGATGCGAGGTAGTAAAGCCAAGCTGAATTTTCCACACCTCATTGGGTCGGTCACTCCGCCGGAGCCGGTGAGAGTAGTTGTCGGCGAGAAGCGCCACTCTCCGGAAACTTCATCTCCGTCATGGTGTGCGTCGGAGGACGATGATGGCTCTGAAGGGCCAAAGAGGAGGAAGAGTCTGGCTGGTCTATTGAATGACTTAGCCACAAAAAGAAGCCAAGCCTGTCTGAAATGA 585 0.5402 MNVFFTSNLTSSPNCDNASPEQGVGDPGDDGRTMFSDEQVNAMKPSDYRANTNNAAVAAREGNVGPRIWRNYRGVRRRPWGKFAAEIRDLKKNGARIWLGTYEREEDAALAYDRAAFRMRGSKAKLNFPHLIGSVTPPEPVRVVVGEKRHSPETSSPSWCASEDDDGSEGPKRRKSLAGLLNDLATKRSQACLK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0660 194 PANTHER DNA-BINDING DOMAIN 49 165 IPR044808 GO:0003700|GO:0009873
Dere11g0660 194 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Dere11g0660 194 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Dere11g0660 194 CDD AP2 71 131 IPR001471 GO:0003700|GO:0006355
Dere11g0660 194 PRINTS Ethylene responsive element binding protein signature 111 131 IPR001471 GO:0003700|GO:0006355
Dere11g0660 194 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Dere11g0660 194 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Dere11g0660 194 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Dere11g0660 194 MobiDBLite consensus disorder prediction 145 180 - -
Dere11g0660 194 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Dere11g0660 194 MobiDBLite consensus disorder prediction 1 30 - -
Dere11g0660 194 MobiDBLite consensus disorder prediction 1 19 - -
Dere11g0660 194 FunFam Ethylene-responsive transcription factor 2 70 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0660 Dere-ChrDere11 11405635 11406219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0660 72 163 AP2-EREBP Transcription Factor Family AT2G44840 72.826 3.29e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere11g0660 AP2 3.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g0660 11 11405635 11406219 Dere11g0660 11 11405635 11406219 ECH