Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0647 ATGGCAGCGGATTCTTCTCTAGAGGGTGTCACACTTGATCCATCTAAATGCAGTAAGCTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAATATCTAAGTGGCCACATGGTGCATCAGAAATGCTACAGTCGTGGAGCCGTCAAGAGATTTTACAAATCCTTTGTGCTGAGATGGGGAAAGAAAGGAAGTATACTGGGTTAACAAAGTTGAAAATTATAGAAAACCTTCTAAAACTTGTTTCTGAAAAGAAATCAGGAGGCCATGAAATTGCAACAGACCTTGAACCGCATTCTTCTACCGCACATGGCCAGAAACCTGCTAAAAGGCAGAGAAAAAATGAGAATCCATCTCGATTAACTCTTCCAGCAAATGATGCTTCTGTCAATAATGGATTTGGAGATGTAGGTATTATTTCGTACTGCAAAAACACAGCTTGCAAAGCTACCCTAAATGAAGCAGATTCGTTTTGCAAAAGGTGCTCATGCTGTATTTGTCATAAATATGATGACAACAAAGATCCTAGCCTTTGGTTAATATGTGGCTCTGAGCCTCCATTTCTCGGTGTTTCTTGTGGCTTGTCATGTCATCTTGAGTGTGCTTTAAAGCATGACAGTTCTGGCATTGCCAAAGATGGAAAATGTCCCAAGCTTGATGGAGGCTTTTACTGCATCTCTTGTGGAAAAGTGAATGATTTGCTCGGATGCTGGAGAAAACAACTGATGGTGGCCAAGGACACCAGACGTGTGGATATACTATGCTACCGTGTTTCACTATGCCAAAGAATTTCACAAGGGACCGAAAAGTATCAAAAACTTTATAAAATCGTTGATGAGGCAGTGAGGAAACTTGAACCAGAATTGGGTCCCTTGACTGGCTCACCGGTGAAGATTGGTAGGGGTATTGTGAACAGACTTTCTTCAGGGCCAGAGGTTCAGAAACTCTGTGGTTTGGCTTTGGAATCACTGGATTCTGTTCTTTCCAAAAGGGTCATGCCTCCATCACCAAATCCAACAATTAAAGATACAAATTTGATTGCTACAAATATGGTGAGGTTTGAAGATGTCACTGATACATCCTTGACTGTGATTTTGGGTTCTGAAGATACTTCTGGAGAAAATATTAGTGGCTATTCCTTGTGGCATCGCAAGGCTCATGATGTGGACTATCCCGTTGAGCCAACTTGTACTTTGCTTCTACCAGATAGAAGGTTCAATATAAAGGGTCTGATTCCAGCTACGAAGTATAGTTTCAAAGTTGTTTACTTTCGTGAATCAAGGGAGTTGGGTATGTGTGAAGTTCACATCTCAACTGAGCATGGCGAGGATGATGTTCCTAACTGCTCAGCAACAGAAAGAAGTGAGAGCCCTATAACCAACTGTAGCAGCCATTCCAATCCTTCTTCAGTGGAAGATGAAACTAATAACAGTAATCCATATAGTGATCAGACTGATGATCGTGCAGACAATTATATTACCTACCACAAGGATGCCGACAAGCTTGCTTCTGAAAATTTATCTAATGATGCTATTAAATATTCCAACAAAGGTGGAGGGGGACTACCAACCAATGCAGATTCTTTGTCAGGCAAGCAACATGCTAAAGGATTGGCTGTAACCATACCCGGTTCTGAGATGCTGAAACTTCAAAACAAGCACTCATCAGATGAACAAATCACTGAGGACTTGAGTACTGATGATGGGTTAAACTCCCCTGTTCAGATTGGGAGGGAATGTGTGCCATTAGTACGTAGCTCAGAAGAAGGCTTGCCTGTTACTCCCTGCAAGTTGGAATTACTTAAGGATGGGCCAGGAAGAAATGGGAGATCTAAGTCAATTGGCAAGGATCAAGAAAATGTGTCTGGAAAAAGAGGGGGCCCACAAGATGGAAGCACATCAAAGAAGAGAGGTGAAGAAAGGCAAGATGAGGGTTGTGCTGCCAATGGGTTTTCAGATCGGGATTTTGAATATTATGTCAAGGTGATCAGATGGCTGGAGTGCGGAGGACATATAGAAAAGAACTTCAGACAGAAATTTTTGACTTGGTACAGCTTGAGAGCAACACCACAGGAAGTAAAGATTGTGAAGGTATATATTGATACATTTCTTGAAGATCCAGCATCTCTTGCTGAGCAGCTTGTAGACACCTTCTCAGAATGTATGTCAAACAAGAGACCATCTGTGGTGCCAGCTGGGTTCTGCATGAAGCTTTGGCATTGA 2220 0.4194 MAADSSLEGVTLDPSKCSKLSMEEKRELVYEISKWPHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKLVSEKKSGGHEIATDLEPHSSTAHGQKPAKRQRKNENPSRLTLPANDASVNNGFGDVGIISYCKNTACKATLNEADSFCKRCSCCICHKYDDNKDPSLWLICGSEPPFLGVSCGLSCHLECALKHDSSGIAKDGKCPKLDGGFYCISCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLCQRISQGTEKYQKLYKIVDEAVRKLEPELGPLTGSPVKIGRGIVNRLSSGPEVQKLCGLALESLDSVLSKRVMPPSPNPTIKDTNLIATNMVRFEDVTDTSLTVILGSEDTSGENISGYSLWHRKAHDVDYPVEPTCTLLLPDRRFNIKGLIPATKYSFKVVYFRESRELGMCEVHISTEHGEDDVPNCSATERSESPITNCSSHSNPSSVEDETNNSNPYSDQTDDRADNYITYHKDADKLASENLSNDAIKYSNKGGGGLPTNADSLSGKQHAKGLAVTIPGSEMLKLQNKHSSDEQITEDLSTDDGLNSPVQIGRECVPLVRSSEEGLPVTPCKLELLKDGPGRNGRSKSIGKDQENVSGKRGGPQDGSTSKKRGEERQDEGCAANGFSDRDFEYYVKVIRWLECGGHIEKNFRQKFLTWYSLRATPQEVKIVKVYIDTFLEDPASLAEQLVDTFSECMSNKRPSVVPAGFCMKLWH 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0647 739 ProSiteProfiles Fibronectin type-III domain profile. 347 443 IPR003961 GO:0005515
Dere11g0647 739 SUPERFAMILY Fibronectin type III 351 423 IPR036116 GO:0005515
Dere11g0647 739 MobiDBLite consensus disorder prediction 450 487 - -
Dere11g0647 739 Pfam PHD - plant homeodomain finger protein 142 261 IPR032881 -
Dere11g0647 739 Gene3D Immunoglobulins 347 438 IPR013783 -
Dere11g0647 739 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 739 IPR044514 GO:0010048|GO:0040029
Dere11g0647 739 MobiDBLite consensus disorder prediction 602 618 - -
Dere11g0647 739 MobiDBLite consensus disorder prediction 551 573 - -
Dere11g0647 739 CDD PHD_VIN3_plant 162 227 - -
Dere11g0647 739 MobiDBLite consensus disorder prediction 89 124 - -
Dere11g0647 739 CDD FN3 351 421 IPR003961 GO:0005515
Dere11g0647 739 MobiDBLite consensus disorder prediction 629 645 - -
Dere11g0647 739 MobiDBLite consensus disorder prediction 597 645 - -
Dere11g0647 739 MobiDBLite consensus disorder prediction 440 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0647 Dere-ChrDere11 11173698 11179028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0647 4 476 PHD Gene Family AT4G30200 53.740 1.52e-166 492