Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0623 ATGGATCGGATCAAGGGTCCATGGAGCCCCGAAGAGGACGAGGCGTTGCAGAAGCTGGTAGAGAAACACGGACCCAGGAATTGGTCCTTGATCTCCAAGTCCCTTCCGGGTCGCTCCGGCAAGTCTTGCCGGTTCCGATGGTGTAATCAGCTTTCTCCTCAGGTGACAGCCCTCGCGGAAGAGCACAAGAGGTTTCAAAAAATTCTCCGCGACACAATAAAAAAAGAAGTAGAAGAGATTGCATCCAGCTTGATGAGGCAGAGCCACGTTTATAGGTATGACGTATTTTTGAGCTTCAGAGGTGAAGATACTAAGGCGTCTTTCACGTCACATCTCTATTCTTCTCTAATCAGTGCTGGAGTTATCGTTTTCAAAGACGATACTGAGCTGCCTAGGGGAAATCATATCTCAAAGGAACTGTCGCAAGCAATTGAAGGTTCTAGAATTTCAATCATCATCTTCTCTAGAGACTCTGCTGGTTCTAGATGGTGTCTCGACGAACTCTCGACAATCACGGAGCAACGCAGAGCAGAGGGTCAGGTGGTTCTGCCTGTGTTCTATGGCGTGGATCCGTCGGAAGTTCGTCGTCAAACCTCTAGTTTCGGAGAAGCATTTCAAGATCTTATACATAGAATCTCTCCCACAGAAGATGAAGTATTGAGGTGGAGGACAGCGCTCCATGAAGCAGGAGGCATTGCAGGGTTTGTTGTGCTTAATTCCCGGGATGAAAGTGAGGATATCAAGCATATTGTTGAGCATGTTTGTAATATACTGGACAAGAATGACTTGTTTGTCACTGACCATCCAGTTGGAGTGAACTCTCGCGTGCAAGATGGAACAAAAGGTGTCGAGGGACTAGCTTTGAAGTTGTCACAAATCAATAGAGTTTCTTTTTGTACAAAAACATTTAAGAAGATGAAGAGACTTAGATTGCTTTGCCTTGATAATGTACAACTTGATGGAGACTATAAATACATTAATGGTGATCTTAGATGGCTTTCTTGGCATGGCTTTCCATTGAAATACATCCCTAACAACTTTTATCAAGAAAATTTAGTTGCTATTGAGTTAAAAAACAATAGCCTCAAGCAAGTGTGGAAGGAACCCCAGTTATTGGAGCGCCTTAAAATCCTCAATCTCAGCCACTCCCCTTACTTGAAGCATACTCCTGACTTTTCAAAACTTCCAAATATGGAAAAGTTGATACTTAAAGATTGTTCAAGGTTGTCTACTATTCATCATACCATTGGGCACCTTGATAAACTTCTTTTGGCAAATTTCAAGGATTGTGCTAGCCTTCGTAGTCTCCCAAGAAGTATTTATAAATTGAAATCTCTAAAGACTCTCATTCTTTCTGGTTGTTCAATGATTGAAAAGTTAGAGGAGGACCTAAAGCAAATGGATTCCTTGACAACTCTACTTGCTGATGACACCGCAATAACACAAGTGCCCTCTACATTGGTAAGATTAAAAAGCATTGAATATATATCTCTTTGTGGTTACGAAGGATTAGCACGTGATGTGTTTCCTCCTCTCATTTGGTCTTGGATGTCCCCAACAAATAATCCTCTATCTCTTGTTCCACAACAAACTTTCGATTCTCTCCAAGTTCACATTTCAGGGTCAAAAAATTCCCTAAGACATCTTTTAATCCAAATTGGAAGGAATGACCAAGTCACAAGTACCCTTTCGGAGAGTATTTTACAGGGATTGACTCCCAGAAAGTGTGGTGATGATTGTGTTCTCCCCGGTGACAAATATCCCTATTGGCTAACTTTCAAGGGAGAAGGAGCTTCAGCAAAATTTAAAGTGCCTAGAGTTAATGGATGTAATTTGAAAGGAATGATTCTTTGTTGTTCGTATTTCCCATCAGGTGTTTTGGGCAACATGGCATTTGAATCTTTTGTAAGTTTATTAATCATAAATTACACAAAGACGATCACTCTACTCTACAAGCGAGACACAGTGACTTCATTTGAAGATGCAGAATGGAAGGGAATAATATCAAATCTAGAAGCAGATGATCAAGTGGAGGGGATTGCAGTTTTTGGGAATGGATTCACTGTGAAGATGACAGCAGTATACTTGATATATTATGACTCATTTGACGAAGAGATGGAGCATTCATCGTCATCTACAGCTATAAATTTAAGAGGATTCAAAAACAGGGAATGCATATGTGAGGAGGAGGAGGAGGCAGGTCAATCTCTAAGACCCAGAAAGACAGTGAGAATGTGA 2238 0.4129 MDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSLPGRSGKSCRFRWCNQLSPQVTALAEEHKRFQKILRDTIKKEVEEIASSLMRQSHVYRYDVFLSFRGEDTKASFTSHLYSSLISAGVIVFKDDTELPRGNHISKELSQAIEGSRISIIIFSRDSAGSRWCLDELSTITEQRRAEGQVVLPVFYGVDPSEVRRQTSSFGEAFQDLIHRISPTEDEVLRWRTALHEAGGIAGFVVLNSRDESEDIKHIVEHVCNILDKNDLFVTDHPVGVNSRVQDGTKGVEGLALKLSQINRVSFCTKTFKKMKRLRLLCLDNVQLDGDYKYINGDLRWLSWHGFPLKYIPNNFYQENLVAIELKNNSLKQVWKEPQLLERLKILNLSHSPYLKHTPDFSKLPNMEKLILKDCSRLSTIHHTIGHLDKLLLANFKDCASLRSLPRSIYKLKSLKTLILSGCSMIEKLEEDLKQMDSLTTLLADDTAITQVPSTLVRLKSIEYISLCGYEGLARDVFPPLIWSWMSPTNNPLSLVPQQTFDSLQVHISGSKNSLRHLLIQIGRNDQVTSTLSESILQGLTPRKCGDDCVLPGDKYPYWLTFKGEGASAKFKVPRVNGCNLKGMILCCSYFPSGVLGNMAFESFVSLLIINYTKTITLLYKRDTVTSFEDAEWKGIISNLEADDQVEGIAVFGNGFTVKMTAVYLIYYDSFDEEMEHSSSSTAINLRGFKNRECICEEEEEAGQSLRPRKTVRM 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0623 745 Gene3D - 4 56 - -
Dere11g0623 745 FunFam MYB transcription factor 5 56 - -
Dere11g0623 745 CDD SANT 7 49 IPR001005 -
Dere11g0623 745 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Dere11g0623 745 SUPERFAMILY Homeodomain-like 5 55 IPR009057 -
Dere11g0623 745 Gene3D - 87 266 IPR035897 -
Dere11g0623 745 Pfam TIR domain 93 256 IPR000157 GO:0007165
Dere11g0623 745 Gene3D Ribonuclease Inhibitor 279 571 IPR032675 -
Dere11g0623 745 ProSiteProfiles TIR domain profile. 91 258 IPR000157 GO:0007165
Dere11g0623 745 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 93 273 IPR044974 GO:0006952
Dere11g0623 745 SMART sant 4 53 IPR001005 -
Dere11g0623 745 SUPERFAMILY Toll/Interleukin receptor TIR domain 89 235 IPR035897 -
Dere11g0623 745 SMART till_3 92 232 IPR000157 GO:0007165
Dere11g0623 745 FunFam Disease resistance protein (TIR-NBS-LRR class) 89 260 - -
Dere11g0623 745 SUPERFAMILY L domain-like 288 550 - -
Dere11g0623 745 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Dere11g0623 745 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0623 Dere-ChrDere11 10922378 10934851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0623 1 73 MYB Transcription Factor Family AT2G23290 73.973 3.58e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere11g0623 TIR 4.1e-41 CL0173