Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0611 ATGAAGCAGAGAAGGAGTAGGCCAAGAGAAGCCATGAACCGAGAGGAGGAGAGAAAGCTGATGAAAGAGGAAGATGGCGGAGCAATGCGAAAAGGGAGGAGAACTGACGTGAACCGAGGAAGAAGACATAATGACAGACATAGAAGCACAAAGGAGAGAGAAAGCTCTACCACCTCTGTTATCTCAGCCAAAAATAGAGAGCCTAGAATCTTGTGCCTTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGAAGAACAACTTACATAGAGTATGTCATTTCCATGGATACTAACAACATCTCAAGATCAAGTAGCACTTACATTCGAAAGCTGAGATTAAACTTTCTTGGTACAAAGTTCATAACATGTGATACACATCCTCCATTCACTTCTGCCCATATACCCCTTCCTAGGACTGGGAGGACAAGCCGAAGGTTTTACTCTAAAAAGGTTTCGCCAAAGGTTCCATCTGGTACTTACAACATAGCTCAGGTGACATATGAATTAAATGTACTCAGAACACGAGGCCCAAGGAGGATGCACTGCATTATGCATTCAATTCCAGCTTCTGCGCTTGATACTGATGGCACAGTTCACGGCCAACTCGAACTGCTTCCTTGCTCCCTTAAGGATTTGTTCCGTAGTATCTCCTTCTCAAAGTCTCTTGATCACTCTATTGAGTTCAGTAATGCAAGATTTTCTGAGATTAGGGCATCCTGTAGTAAGGAGGATGAGGAAGGCAAGATAAGACCCTTGATCCTAAAAAACAAACCTCCAAGATGGCATGAACAGTTGCAATACTGGTGCCTCATCTTCTGGGGATGA 843 0.433 MKQRRSRPREAMNREEERKLMKEEDGGAMRKGRRTDVNRGRRHNDRHRSTKERESSTTSVISAKNREPRILCLALLVENGKFLLSAKRTRRTTYIEYVISMDTNNISRSSSTYIRKLRLNFLGTKFITCDTHPPFTSAHIPLPRTGRTSRRFYSKKVSPKVPSGTYNIAQVTYELNVLRTRGPRRMHCIMHSIPASALDTDGTVHGQLELLPCSLKDLFRSISFSKSLDHSIEFSNARFSEIRASCSKEDEEGKIRPLILKNKPPRWHEQLQYWCLIFWG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0611 280 SUPERFAMILY Tubby C-terminal domain-like 77 280 IPR025659 -
Dere11g0611 280 MobiDBLite consensus disorder prediction 1 54 - -
Dere11g0611 280 PANTHER TUBBY-RELATED 72 278 - -
Dere11g0611 280 MobiDBLite consensus disorder prediction 1 61 - -
Dere11g0611 280 Gene3D Tubby Protein; Chain A 45 280 IPR025659 -
Dere11g0611 280 PRINTS Tubby superfamily signature 260 277 IPR000007 -
Dere11g0611 280 PRINTS Tubby superfamily signature 113 137 IPR000007 -
Dere11g0611 280 PRINTS Tubby superfamily signature 165 192 IPR000007 -
Dere11g0611 280 PRINTS Tubby superfamily signature 97 113 IPR000007 -
Dere11g0611 280 Pfam Tub family 77 279 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0611 Dere-ChrDere11 10510044 10511614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0611 71 280 TUB Transcription Factor Family AT1G43640 61.905 2.60e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere11g0611 Tub 6.3e-52 CL0395