Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0605 ATGTCTAGCCCTTCGTCACCACTTCGCCATTCTGTGTCTGATCCAAACCTCTCCTCCAATTCTCACTTGTTCTCAGCCAAATCTCGCAGCAGAACCACCCTCTCTTCAAAGCCTTCACCTTCAAACATCGTCGCAAAGCTCAAGCTTGCCATCAACGATGAGCACTCTTTGCACAGCCCCTACTACAGAGGCCTCACAGATCAGTCTCTTGCTATCAACGACGAAGATCATGGATCGCAGACTCATCATCATCAGAGGATTCAGAGCCACCTGAACCGTGGGCATAATAATAATAGCCTGCTTTCGTCAGGTGGGGATAGTCCTTACTACAAAGGGCTCACGGATTTTTCTCTTGTTCTTCGTGGACGACAGGAGCTACAGTCACCTGCATATGCTTGGCGACTTCACGAGGTTGAAGGTGGAAATGACTGCAGCCCATACTACAAAGGCCTCATCGATTATACACTTGCGATTAATGAACTTGAGGTAGGAGGAGGAGGAGGATCATATGAGCATGGTGGCGGTGGTTCATCTCTTGGACCTCAAGCTCATCAAACCCACCATGCTATGAGCTCCTCCTATTCGTCAGCCATTACCATGAGCTTGAATTCATGCCTGGGGGATCAGAATGAGTTTCTTAATGAGGCCACAGCCGCTGCTGCAACCGAGTTGACCGAGACCGACCCGAGAGGACTGTGTACTTTGTCATCGTTATCTCCACCACCACCGCTGCCGCCGCCGCCGCCGCCACCAAAGGACTCTCCAACAGGTAAGACTGATTTGAGTGTGGAGCTGGAAGTTGAAGATCCGAAGGGATTGGGGGAGAGAGTGTCAGAAGAAAATAATATTGCAGAGGAAAAGGCTTTGGATATGGAGAATAAGGAGGCCATGAGTGAGTCTGGTTTAGCTGGAGAGAGTGAGAAGGATGATAAGAAGCCCTTGAGAGAGAGTATTCCCATTTCTGAACAAGCTGTGTTTGCATCAGAAGAGTCATCATGTAAAGATGGTGCAGATGTTAACCAGGAGATGAAGGATATAACTAAGGAAGGAAGCTTGAAAGAGCGTACATGGGCAAACAAGTACCAGCCCAAGCAATTGGCAGACTTTATCTGCCACAAACAGATAACAACTCAGCTGCAAACAATGGTAAGAGAGGGGTGTACTTGTAATTATTTTATATTTGAAGGACCCCCAGGTGTTGGAAAGAGATCAATGATACGAGCCATGCTTCGAGAGGTTTTTGGTCGTGAAGCAGTAGAGGTGACTGAAGAATGTAAAACATTCATATTGAAGGGAGAAATGGTAGGAAACATCCAAGTTCGTATAAAGAGATCACCACATCATGTAGAGGTCAATCTCTCGGAAACAAAAGGATATGAGCAGCATGTTATTGTTGATTTGTTCAGAGAAACTTATGACAACATCTTAATAAACGATTCGTTGCTATGCAGCTCAGATAACTGCCAAGCAATTATTGTATACAAGGCTGAGAAGCTATCATCAGAATCCTTATTGTACATCAAGTGGATGCTAGAAAAGTATAAGGGTTGCAATAAAGTCTTCTTTTGCTGCTATGATGAATCAAAGCTCCAAACTATCAAACCAATTTGCACCACTATTCGCCTTTCACCTCCTTCAACCCATGAGATCGTTGAGGTTTTGAAATACATAGGGAAAAAAGAAGGGAAAGAATTGTCACCTGAATTCCTTGTAAAGGTTGTTGACAAGTCCAAAAACAATCTTCGTCAAGCCATACGATCCTTGGAGGCCACATGCCAAAACAAGGATTCAATCAAAGAAGACGAGTTAATTTTAACAGGATGGGAAGAGGACATTTCAAATATTGCTCAGAATATAATTGAAGAGCAAAGTCCAAAACAGCTGTACATCATTCATGTAAAGCTTCAAAGTCTGATGATTCACAACGTTTCCCCTGACTTTGTTTACAAGTATTTGCTATCAGAGTTAAATTCTCTAGTTGATGAATCACTAAGGCCGGGAATTGCAAAACTTGAGAAGGAGTACAATAATCTGAAGAGTGTGAAGCATGGTGGTAATGCCCAAAACAAAGAAGGGGAATTACCTGATGAGAGGAACAACGAACTACCCAGAAAGAATGCTCAGAAATACTTGAAAGTTGAAGAGTTCATAGCGAAATTCATGAGCTGGTACAAAAGCTCATCAGCAAAAGGTGGTAAGCAAGTGCAAGATGATATTGGAACATGA 2226 0.4362 MSSPSSPLRHSVSDPNLSSNSHLFSAKSRSRTTLSSKPSPSNIVAKLKLAINDEHSLHSPYYRGLTDQSLAINDEDHGSQTHHHQRIQSHLNRGHNNNSLLSSGGDSPYYKGLTDFSLVLRGRQELQSPAYAWRLHEVEGGNDCSPYYKGLIDYTLAINELEVGGGGGSYEHGGGGSSLGPQAHQTHHAMSSSYSSAITMSLNSCLGDQNEFLNEATAAAATELTETDPRGLCTLSSLSPPPPLPPPPPPPKDSPTGKTDLSVELEVEDPKGLGERVSEENNIAEEKALDMENKEAMSESGLAGESEKDDKKPLRESIPISEQAVFASEESSCKDGADVNQEMKDITKEGSLKERTWANKYQPKQLADFICHKQITTQLQTMVREGCTCNYFIFEGPPGVGKRSMIRAMLREVFGREAVEVTEECKTFILKGEMVGNIQVRIKRSPHHVEVNLSETKGYEQHVIVDLFRETYDNILINDSLLCSSDNCQAIIVYKAEKLSSESLLYIKWMLEKYKGCNKVFFCCYDESKLQTIKPICTTIRLSPPSTHEIVEVLKYIGKKEGKELSPEFLVKVVDKSKNNLRQAIRSLEATCQNKDSIKEDELILTGWEEDISNIAQNIIEEQSPKQLYIIHVKLQSLMIHNVSPDFVYKYLLSELNSLVDESLRPGIAKLEKEYNNLKSVKHGGNAQNKEGELPDERNNELPRKNAQKYLKVEEFIAKFMSWYKSSSAKGGKQVQDDIGT 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0605 741 Coils Coil 274 294 - -
Dere11g0605 741 Gene3D - 355 545 IPR027417 -
Dere11g0605 741 MobiDBLite consensus disorder prediction 230 330 - -
Dere11g0605 741 MobiDBLite consensus disorder prediction 689 705 - -
Dere11g0605 741 MobiDBLite consensus disorder prediction 75 104 - -
Dere11g0605 741 MobiDBLite consensus disorder prediction 169 190 - -
Dere11g0605 741 Gene3D - 546 606 - -
Dere11g0605 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 602 IPR027417 -
Dere11g0605 741 MobiDBLite consensus disorder prediction 262 294 - -
Dere11g0605 741 MobiDBLite consensus disorder prediction 236 255 - -
Dere11g0605 741 MobiDBLite consensus disorder prediction 301 317 - -
Dere11g0605 741 CDD HLD_clamp_RFC 545 601 - -
Dere11g0605 741 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 355 658 - -
Dere11g0605 741 SUPERFAMILY post-AAA+ oligomerization domain-like 607 676 IPR008921 GO:0003677|GO:0006260
Dere11g0605 741 FunFam replication factor C subunit 3 546 604 - -
Dere11g0605 741 Gene3D - 607 724 - -
Dere11g0605 741 MobiDBLite consensus disorder prediction 681 705 - -
Dere11g0605 741 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0605 Dere-ChrDere11 10404303 10423658 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0605 357 726 Core DNA Replication Machinery Family AT5G27740 28.877 2.96e-45 164