Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0542 ATGTCACCCACCAAGTACGATCACACCACATCACTCACCATACACGTGTCACGAAATTGCAAGGAAATTTCAGCGTATCCGCGTGATGCAAACCCCATACAAATATGTTTCCCATCCGTCAAGGGTCGCTTCTCCAGCAAGAATGGAAATCCTCCCAGCGTACCCTATAAAAACTCTCTCAGCGCCGTAAGCATAAAAAGCCGAAACCGAGTTTCCGGAGCTTCACCGGTTTTCTCCACGTTGCCGGTCACGTCCGCCATGAACAACCTCGACGACGAGAACCACCACCACCACCACCGTCGCTGCCACAGCACGTTGCTGGACTTGGATTTTGAGAATCTGAAAGTGATCTCCGCCGTGGGGCGCGGAGCCAAGGGCGTTGTGTTCGCGGCTATTAGGAACGACGATGCGCTTGGCGAGTATTTCGCCCTGAAAGTGATCTCCAAGGCTTTGATTCAAAAGAAGGGGAAGGCGCTGAACAACGATGGTGGCGAGTGCAAGAGGGTGTCGTTTGAGCAGCAAGTGCTGCGTCGTTTTGATCATCCGCTGTTGCCCAGGTTGCGAGGGGTTTTGGAAACCGAGAAGATCATTGGGTACGCCATCGATTATTGCCCCGGTGGTAATCTCCATTCTCTTCGGAAAAAACAGAGCGAGAAGATGTTCTCCGATGATACCATAAGGTTTTATGCTGTGGAATTGGTCCTCGCATTGGAGTATTTGCACAATCTGGGAATAGTGTACAGGGATTTGAAGCCAGAAAACATAATGATCCAAGAAACCGGTCATATCATGCTCGTCGATTTCGATCTCTCCAAGAAACTAAACCCCAAATCTCCACAATCCATGAGTGCCAACTCGTCGCCAATTTCCCACTCGGTGATGAAGGACTTACGAAAGAAACGCTTCTTCAGATTCTATAGTTGCTCCATGTCAGGTATCTCATCGTACGAAATGGAAACCCGACCTGACTTCCAATGGGTGCGGCGGAGCGAGTCGGACTCGGTCGAGAAATCGAACTCGTTCGTCGGAACGGAGGAATACGTGGCGCCTGAGGTTATATCGGGAAAGGGACATAATTTCGGGGTGGATTGGTGGTCATTCGGCGTCGTTTTGTACGAGATGCTCTATGGAACGACGCCGTTTAAGGGGGAGAATAGGAAGGAAACGTTTTATCGGATTTTAACGAAGGAGCCAGAGTTAACCGGAGAGAAGACGCCGTTGAGGGATCTGATCGCGAAATTGCTGGAGAAGGATCCTGACCGTCGAATTGATGTGGAGGGAATCAAGGGCCACGATTTCTTCAGAGGGGTTAACTGGAACAGGGTGTTGCAGGTAGCGCGGCCGCCGTTTATCCCTCTGAATGAGGTTGAAGACGCAAAGGGGTTTAAGAAAAATGACGTGGAGGTATTTGTCGATGAAATATTTTTTGGAAAGGAGGGTGAAGAGGAAAAGGAGAAAAAGAAGGATGAAGAAGAGAATGGACAGAATAACAAGAAAGTGTGGGTAGAGAAGTTGAGCAACAACCCCACTGAGAATGAAAATTTTTTGATTTTTTGA 1557 0.4894 MSPTKYDHTTSLTIHVSRNCKEISAYPRDANPIQICFPSVKGRFSSKNGNPPSVPYKNSLSAVSIKSRNRVSGASPVFSTLPVTSAMNNLDDENHHHHHRRCHSTLLDLDFENLKVISAVGRGAKGVVFAAIRNDDALGEYFALKVISKALIQKKGKALNNDGGECKRVSFEQQVLRRFDHPLLPRLRGVLETEKIIGYAIDYCPGGNLHSLRKKQSEKMFSDDTIRFYAVELVLALEYLHNLGIVYRDLKPENIMIQETGHIMLVDFDLSKKLNPKSPQSMSANSSPISHSVMKDLRKKRFFRFYSCSMSGISSYEMETRPDFQWVRRSESDSVEKSNSFVGTEEYVAPEVISGKGHNFGVDWWSFGVVLYEMLYGTTPFKGENRKETFYRILTKEPELTGEKTPLRDLIAKLLEKDPDRRIDVEGIKGHDFFRGVNWNRVLQVARPPFIPLNEVEDAKGFKKNDVEVFVDEIFFGKEGEEEKEKKKDEEENGQNNKKVWVEKLSNNPTENENFLIF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0542 518 FunFam Serine/threonine-protein kinase OXI1 336 453 - -
Dere11g0542 518 ProSiteProfiles Protein kinase domain profile. 114 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g0542 518 Pfam Protein kinase domain 116 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g0542 518 Pfam Protein kinase domain 323 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g0542 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Dere11g0542 518 MobiDBLite consensus disorder prediction 480 518 - -
Dere11g0542 518 Gene3D Phosphorylase Kinase; domain 1 114 207 - -
Dere11g0542 518 PANTHER FLIPPASE KINASE 1-RELATED 85 461 - -
Dere11g0542 518 MobiDBLite consensus disorder prediction 480 498 - -
Dere11g0542 518 MobiDBLite consensus disorder prediction 499 518 - -
Dere11g0542 518 ProSiteProfiles AGC-kinase C-terminal domain profile. 435 518 IPR000961 GO:0004674|GO:0005524|GO:0006468
Dere11g0542 518 FunFam Serine/threonine-protein kinase OXI1 208 276 - -
Dere11g0542 518 Gene3D Transferase(Phosphotransferase) domain 1 208 282 - -
Dere11g0542 518 Gene3D Transferase(Phosphotransferase) domain 1 323 453 - -
Dere11g0542 518 SUPERFAMILY Protein kinase-like (PK-like) 91 460 IPR011009 -
Dere11g0542 518 SMART serkin_6 114 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0542 Dere-ChrDere11 9137408 9139210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0542 109 518 AGC Kinase Gene Family AT3G25250 60.048 1.53e-159 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Dere11g0542 Pkinase 1e-32 CL0016