Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0540 ATGGTAACATATGGAGGTTCTTTGTCAGCGGCGGCGAAACAAGCGGAGCAACTAAGAATAGACGGTAATGTTTACTTCAAGAAAGATCGTTTCGGGGCTGCCATCGATGCTTATACCGAGGCAATCACTTTGTGCCCTAATGTTCCGGTTTATTGGACGAATCGTGCTCTGTGTCATCGCAAGCGCAATGACTGGGCTAGAGTAGAGGAAGACTGCCAGAGAGCTATTCAACTGGACAACAAGTCAGTCAAGGCCCATTATATGTTGGGGCTTGCATTGTTACAGAGACAAGAATATTACACCGGGATCAGAGAATTGGAGAAGGCGTTGGATCTTGGGAGGGGTGCTAATCCTAACAGCTATATGGTAGAGGAGATCTGGCAGGAGCTTGCAAAAGCAAAATACCTAGAATGGGAACATGCGTCTACTAAGAGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTCAGTTTGCTCTAGAGGAAAAGCATTTTCTTGATGTCTCCCAAATGGAAGGATTTATAGAAGAAGCAGAAACTTCACACTTGCAACAACTAGAGGCTTTAGAAAGAGTTTTCAGCAAAGCTGCAGAGGCTGACACGCCTACGGAGGTTCCAGATTATTTATGTTGCAGAATCACTCTCGATATTTTTTGTGATCCTGTCATTGCCCCAAGTGGACTTTCATATGAAAGGGCAGTGATTCTTGAACATCTTCAGAAGGTGGGTAAGTTTGATCCAGTTACGAGGGAACCACTTGATCCATCACAGCTTGTACCGAACTTGGCCTTAAAGGAAGCAGTTCAGACATTCTTGGACAAACATGGGTGGGCCTACAAGCCACCACAATTGCAAAATGCCCTTCCCTTTCTTGCAATGGTGTTCGTACCTGTGGTCTGA 900 0.4522 MVTYGGSLSAAAKQAEQLRIDGNVYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHRKRNDWARVEEDCQRAIQLDNKSVKAHYMLGLALLQRQEYYTGIRELEKALDLGRGANPNSYMVEEIWQELAKAKYLEWEHASTKRSWELQSLKEACQFALEEKHFLDVSQMEGFIEEAETSHLQQLEALERVFSKAAEADTPTEVPDYLCCRITLDIFCDPVIAPSGLSYERAVILEHLQKVGKFDPVTREPLDPSQLVPNLALKEAVQTFLDKHGWAYKPPQLQNALPFLAMVFVPVV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0540 299 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Dere11g0540 299 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Dere11g0540 299 Pfam Tetratricopeptide repeat 22 47 IPR019734 GO:0005515
Dere11g0540 299 SMART tpr_5 83 116 IPR019734 GO:0005515
Dere11g0540 299 SMART tpr_5 15 48 IPR019734 GO:0005515
Dere11g0540 299 SMART tpr_5 49 82 IPR019734 GO:0005515
Dere11g0540 299 SUPERFAMILY TPR-like 10 135 IPR011990 GO:0005515
Dere11g0540 299 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Dere11g0540 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Dere11g0540 299 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Dere11g0540 299 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Dere11g0540 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 280 IPR013083 -
Dere11g0540 299 SUPERFAMILY RING/U-box 198 279 - -
Dere11g0540 299 CDD RING-Ubox_CHIP 205 275 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0540 Dere-ChrDere11 9097266 9103634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0540 11 280 U-box Gene Family AT3G07370 68.519 1.14e-141 399