Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0539 ATGGCGAAGCCCGGAGTGTTGGAGTCCGATCCAACGGTGGTAACGGCGAAGGCCTTGGAGCTGAAGAAGGAGTTGCAGAGATTGGTGAAGTCCATCGTTGAGGATGAGGATTGTTGCAGCATCCGTACCATTGATACGGCCAAGGAGACTCTCTCTCTGCTAAAGGAGTTGAAGCTCAGAAAGAGATCGTCGTCCTCCTCGTCCTCGTCCTCGTCGTCGCCGTCACTGTCTTTGACACTTCGCAACAAAACTGCGTCTAATTGCCCGGAAGAATTCAAGTGCCCTATTTCCAAGCAGTTGATGAGAGATCCTGTCATTGTGGCTTCTGGCCAGACATATGATAGAACATTCATCCAAAAGTGGCTGAAAGCAGGGAACCGGACTTGCCCTCAGACGCAGCAAGTTCTCTCACACACTGTCCTCACTACGAATCACCTAATCAGAGAAATGATTGAGCAATGGTGTAAAAGCCAAGGAATTGAACTTTTTAACCTGGTTCACTATGTCTATGAGGAAAGCACAGCAGAAGCAGACCATGATCATTTTCTTTCTTTGCTTGAGAAAATGTCTTCATCAGCACTTTCTGAACAGAAAGCTGCTGCAAAGGAGCTCCGGTTGCTGACAAAGAAAATGCCTTCTTTCCGGGTGCTTTTTGGCGAGTCTTCAGATACCATTCCCAAATTGCTTAAGCCGATCTCTGGGAGTCACTCTCTTGGTAATGTTCACCCTGACCTCCAAGAAGATGTAATCACAATACTCCTCAATATCTCAATCCATGATAACAACAAGAAGCTTGTAGCAGAAACCCCAATGGTAATTTCTCTCCTAATGAGGGCATTGAGATCAGGGACAATCCAAACACGAAGCAATGCAGCAGCAGCCCTTTTCACTTTGTCAGCTCTAGACTCAAACAAGGAACTTATAGGGAAATCTGGAGCCTTGAAGCCACTCATTGACCTTCTAGAAGAAGGCCACCCCTTAGCCATGAAAGATGTTGCATCAGCAATTTTTACCTTATGTGTCCTTCATGAGAACAAGGCCAGAGCAGTGAAGGATGGTGCGGTAAAGGTGATTGTAAGGAAGATTATGGACCGGGTTCATGTCGATGAATTACTAGCCATCCTCGCGCTTCTCTCAAGTCATCAGAAGGCTGTACAGGAAATGGGAGAGCTTGAAGCTGTTCCTAGCTTGCTGAGTATAATCCGGGAGAGCACATGTGAACGGAACAAAGAGAATTGCATTGCGATACTTCAGACTCTATGTCTGTATGATAGAACCAGGTTGAAGGAAATAAGGGAAGAAGAGAACAGGCATAGAACGATCTCTGAGCTTGCACAAAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGAAATTCTTGAGAGACTAAACAGGGTTGTTAATATTACGCACACTGCATGA 1422 0.4585 MAKPGVLESDPTVVTAKALELKKELQRLVKSIVEDEDCCSIRTIDTAKETLSLLKELKLRKRSSSSSSSSSSSPSLSLTLRNKTASNCPEEFKCPISKQLMRDPVIVASGQTYDRTFIQKWLKAGNRTCPQTQQVLSHTVLTTNHLIREMIEQWCKSQGIELFNLVHYVYEESTAEADHDHFLSLLEKMSSSALSEQKAAAKELRLLTKKMPSFRVLFGESSDTIPKLLKPISGSHSLGNVHPDLQEDVITILLNISIHDNNKKLVAETPMVISLLMRALRSGTIQTRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVLHENKARAVKDGAVKVIVRKIMDRVHVDELLAILALLSSHQKAVQEMGELEAVPSLLSIIRESTCERNKENCIAILQTLCLYDRTRLKEIREEENRHRTISELAQNGTSRAKRKASEILERLNRVVNITHTA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0539 473 SUPERFAMILY ARM repeat 182 463 IPR016024 -
Dere11g0539 473 ProSiteProfiles U-box domain profile. 87 161 IPR003613 GO:0004842|GO:0016567
Dere11g0539 473 FunFam RING-type E3 ubiquitin transferase 172 469 - -
Dere11g0539 473 SUPERFAMILY RING/U-box 86 164 - -
Dere11g0539 473 SMART Ubox_2 91 154 IPR003613 GO:0004842|GO:0016567
Dere11g0539 473 CDD RING-Ubox_PUB 89 141 IPR045210 -
Dere11g0539 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Dere11g0539 473 Gene3D - 369 468 IPR011989 -
Dere11g0539 473 Gene3D - 182 368 IPR011989 -
Dere11g0539 473 PANTHER U BOX DOMAIN-CONTAINING 15 463 - -
Dere11g0539 473 Pfam U-box domain 89 158 IPR003613 GO:0004842|GO:0016567
Dere11g0539 473 FunFam RING-type E3 ubiquitin transferase 87 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0539 Dere-ChrDere11 9071456 9075114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0539 150 473 U-box Gene Family AT3G07360 61.515 7.67e-134 387