Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0530 ATGGGTATTTCCAGGGATTCCATGCATAAGAGGCGTGCGACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGTCAGCCAGCAAACACTAAGCTTTCAAGCAACAAGACAGTCAGAAGAGTGCGTGTAAGGGGTGGCAATGTGAAATGGAGGGCTTTGCGTTTGGATACAGGAAATTATTCATGGGGTAGTGAAGCTGTAACTCGCAAGACACGTATATTGGATGTGGTTTACAATGCCTCAAATAATGAGCTTGTGCGTACTCAAACCCTGGTGAAGGGTGCTATTGTTCAGGTTGATGCTGCTCCATTCAAGCAGTGGTACCTTCAGCATTATGGTGTTGATATTGGGAGGAAGAAGAAAACAGCTACCAAGAAGGACTCTACTGAGGAGGGTGAAGCCACTGTTGAAGAGACCAAAAAAAGTAACCATGTTCTGAGGAAACTGGAGAAGCGCCAGAAAGATCGTAAGCTTGATCCTCACATTGAAGAGCAGTTTGGGGGTGGCCGATTGCTGGCTTGCATTTCATCTCGCCCTGGTCAATGTGGCAGAGCCGATGGGTACATATTGGAAGGCAAGGAGCTTGAGTTTTACATGAAGAAAATTCAGAGGAAGAAGGGAAAGGGTGCTGCTGCTGCTTGA 660 0.4697 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGVDIGRKKKTATKKDSTEEGEATVEETKKSNHVLRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAAAA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0530 219 MobiDBLite consensus disorder prediction 1 42 - -
Dere11g0530 219 FunFam 40S ribosomal protein S8 109 175 - -
Dere11g0530 219 Pfam Ribosomal protein S8e 5 196 IPR022309 -
Dere11g0530 219 CDD Ribosomal_S8e_like 5 196 - -
Dere11g0530 219 NCBIfam ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Dere11g0530 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 214 IPR001047 GO:0003735|GO:0005840|GO:0006412
Dere11g0530 219 MobiDBLite consensus disorder prediction 11 26 - -
Dere11g0530 219 FunFam 40S ribosomal protein S8 32 160 - -
Dere11g0530 219 Gene3D - 32 160 - -
Dere11g0530 219 Gene3D - 161 214 - -
Dere11g0530 219 FunFam 40S ribosomal protein S8 161 214 - -
Dere11g0530 219 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0530 Dere-ChrDere11 8902508 8905005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0530 1 219 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.091 1.81e-126 354