Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0529 ATGAAATGCACTACAAGAAGCGAGGGAGGGAGAAAGGCAGGAGGGTGCAGGCGACGTAGCTTATACCAAAGCTCGGCCAAGATGGGTATTTCCAGGGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGTCAGCCAGCAAACACTAAGCTTTCAAGCAACAAGACAGTCAGAAGAGTGCGTGTAAGAGGTGGCAATGTGAAATGGAGGGCTTTGCGTTTGGATACAGGAAATTATTCATGGGGTAGTGAAGCTGTAACTCGCAAAACACGTATATTAGATGTGGTTTACAATGCCTCAAATAATGAGCTTGTGCGAACTCAAACCCTGGTGAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCATTCAAGCAGTGGTACCTTCAGCATTATGGTGTTGATATCGGTAGGAAGAAGAAAACAGCTGCCAAGAAGGACTCTACTGAGGAGGGGGAAGCTACTGCAGCTGAAGAGACAAAGAAAAGTAAGCATGTGCTGAGAAAACTGGAGAAGCGCCAGAAAGATCGTAAGCTTGATCCACACATTGAAGAGCAGTTTGGTGGTGGCCGATTGCTTGCTTGCATTTCGTCTCGCCCTGGTCAATGTGGCAGAGCCGATGGTTACATATTGGAAGGCAAGGAGCTTGAATTTTACATGAAGAAAATTCAAAGGAAGAAGGGAAAGGGTGCTGGTGCTGCTTGA 744 0.4704 MKCTTRSEGGRKAGGCRRRSLYQSSAKMGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSTEEGEATAAEETKKSKHVLRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAGAA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0529 247 FunFam 40S ribosomal protein S8 59 188 - -
Dere11g0529 247 PANTHER 40S RIBOSOMAL PROTEIN S8 28 242 IPR001047 GO:0003735|GO:0005840|GO:0006412
Dere11g0529 247 MobiDBLite consensus disorder prediction 1 15 - -
Dere11g0529 247 MobiDBLite consensus disorder prediction 1 52 - -
Dere11g0529 247 Gene3D Ribosomal protein S8e, subdomain 135 203 IPR042563 -
Dere11g0529 247 NCBIfam ribosomal protein eS8 28 226 IPR001047 GO:0003735|GO:0005840|GO:0006412
Dere11g0529 247 Gene3D - 53 240 - -
Dere11g0529 247 ProSitePatterns Ribosomal protein S8e signature. 38 57 IPR018283 GO:0003735|GO:0005840|GO:0006412
Dere11g0529 247 MobiDBLite consensus disorder prediction 38 52 - -
Dere11g0529 247 FunFam 40S ribosomal protein S8 136 203 - -
Dere11g0529 247 CDD Ribosomal_S8e_like 32 224 - -
Dere11g0529 247 MobiDBLite consensus disorder prediction 153 177 - -
Dere11g0529 247 FunFam 40S ribosomal protein S8 189 242 - -
Dere11g0529 247 Pfam Ribosomal protein S8e 32 224 IPR022309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0529 Dere-ChrDere11 8883777 8887294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0529 28 247 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.091 5.19e-128 359