Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0527 ATGGAGAACGAATTCTTCCTAAATGCCGCTTCCCTTCACTTCGAACCTTCGTCCTCTTCTTCAATGCCTACGTGGCAATCACTCTCATCCGCCATGGATGTTCAAGCTTCGGTTCTGAATTGCTCTCCTGAGCAAACCCAAGATTGCTTTTACAATAACAACAACAGCAATAACCCCACATGGGAAAAGTCAGCGGATCATCATGGCCTTCAATTTGATTCTGCCCTGAGCTCGATGGTTTCTTCCCCCGCAGCGTCCAATTCCAATATTATACCCAATGATGAGAACTTCGTGATCACGGAATTGATAGGAAAATTGGGAAACATTGGTGCTTCTCCTTACATTAATGGCATTAATAGCACTAATACTTCGTGTTATAGCACTCCCTTGAGCTCTCCTCCGAAGATGAACATGATGAATCAGTTGTTGAAAGAGAACTTGCCCAGTTTGGGGAAATCAATGGCTATGAATTCTACTGTTGCAGAATTCTCATCTGATCCTGGTTTTGCCGAGAGAGCTGCCAAGCTTTCTTGCTTTGGAAGCAGGAGCTTCAATGGCAGAACAAACCAATTGGGTTTGAACAATGGTCAAATTTCTTTAAGATCTACTCCATTAGTCGAAAATGCAAAGCTCGCTCGAGTATCAAGTAGCCCAGCTCTGAAAGCACTTGGCGGATCTCAAATGGAAGTGGCGAATTCTCAAGAGGAATCTACAATCTCTGAGCAAACCCCAAATGGGGAAAATGGGGTGAATGGGAATTCCAGGAAAAGAAAATCTTCGTCCAAGGGAAAAGCCAGAGAAACTTCAACTTCAACCAATCCTAGTGCCAAGGCTAATGAAGCACATAAAGATTCGAATGCAAAGCGGAGCAAGCCGAATGAGGAAGAAAATGGAACCATGAAGGCAGAGGAAGAGTCAAAAGGAGGCTCTACCAATGGAGGAGATGAGAAGCCGAACAAGAGTAATTCATCAAAACCTCCTGAACCCCCAAAAGACTACATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGACAGTCACAGTCTTGCAGAAAGAGTCCGAAGGGAAAAAATCAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTGCCAGGTTGCAATAAGGTCACTGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTGCAGTCATTGCAGCGTCAAGTTGAGTTTTTATCTATGAAACTGGCTTCTGTGAACACCAGGCTGGACTTCAATATTGACAGTTTAATCTCAAAAGATATATTTCAATCAAATAACTCTCTGGCACACCCAATATTCCCTTTAGATTCCTCAGCACAAGCCTTTTATGGGCACCACACTCAGCAAAACCCAGCAATCCACAATAACATTCTTAATGGAGCGGTGACCCACAGCACAGTTGACCCATTAGAAACTGCTTCTCTGTGCCAAAACCTTGGCATGCAATTACCTGCCCTTAATGGCTTTAATGAAGGTGGTTCTCAGTTTCCATTAGCATTCTGTGAGGATGACCTCCAGACAATTGTTCAGATGGGATTTGGCCAAACTGCAACTGGGAAATCACCCACTCATTCCCAGAACTTCAACGGCTCAAATCAAGTCTCCCTTCTGAAAGTTGAGCCCTAA 1629 0.4371 MENEFFLNAASLHFEPSSSSSMPTWQSLSSAMDVQASVLNCSPEQTQDCFYNNNNSNNPTWEKSADHHGLQFDSALSSMVSSPAASNSNIIPNDENFVITELIGKLGNIGASPYINGINSTNTSCYSTPLSSPPKMNMMNQLLKENLPSLGKSMAMNSTVAEFSSDPGFAERAAKLSCFGSRSFNGRTNQLGLNNGQISLRSTPLVENAKLARVSSSPALKALGGSQMEVANSQEESTISEQTPNGENGVNGNSRKRKSSSKGKARETSTSTNPSAKANEAHKDSNAKRSKPNEEENGTMKAEEESKGGSTNGGDEKPNKSNSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFNIDSLISKDIFQSNNSLAHPIFPLDSSAQAFYGHHTQQNPAIHNNILNGAVTHSTVDPLETASLCQNLGMQLPALNGFNEGGSQFPLAFCEDDLQTIVQMGFGQTATGKSPTHSQNFNGSNQVSLLKVEP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0527 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 411 IPR036638 GO:0046983
Dere11g0527 542 MobiDBLite consensus disorder prediction 227 256 - -
Dere11g0527 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Dere11g0527 542 Gene3D - 339 414 IPR036638 GO:0046983
Dere11g0527 542 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 235 447 IPR024097 GO:0006355
Dere11g0527 542 SMART finulus 348 398 IPR011598 GO:0046983
Dere11g0527 542 MobiDBLite consensus disorder prediction 224 333 - -
Dere11g0527 542 FunFam Basic helix-loop-helix transcription factor 339 411 - -
Dere11g0527 542 MobiDBLite consensus disorder prediction 517 542 - -
Dere11g0527 542 CDD bHLH_AtBPE_like 332 417 - -
Dere11g0527 542 Coils Coil 389 409 - -
Dere11g0527 542 Pfam Helix-loop-helix DNA-binding domain 346 393 IPR011598 GO:0046983
Dere11g0527 542 MobiDBLite consensus disorder prediction 265 280 - -
Dere11g0527 542 MobiDBLite consensus disorder prediction 281 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0527 Dere-ChrDere11 8838685 8841125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0527 1 496 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 47.929 1.98e-120 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere11g0527 HLH 4.2e-06 No_clan