Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0508 ATGAGCACTCAACCTTTCAGGGGGGCTGCTGTCAGAAGTTATCGGAGGAGGAAGACAGTTTTGAACTTGGACCTTAACTGTTTCCCACCTAGTGAGAACCAGGAACAGGAACGACCCTTGACTCAGTTGGTGCCTCAGGAAGTTCAAGATGGCCAGCAACCGGTGGTTGTACAGCCTGTGATGATTGATGTGGAGGCCATTGAAGACGATGTTGTTGAATCCAGTGCCAGGGCTTTTGCTGAGGCTAGAAACAATTTGAGAAGAAATCGTAGGAGGACTATAGTTGATGTGGATTCAGAAGAGTGGCCTGGAGGAACCAATAATAGTCACAAGAAACGCAGAAGGAATTCCCCAAACCAAACAATTATAAACTGTGATCTTTATATAAACCTGGAAGGCAGTAGCAGTTCTATGAAGGATAGCTTAATAAAGCCGCCTGAACCTCCAAAGGATCCTGTCTTTAACTGTCCAATATGTATGGGCCCACTAGTAGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATTAAGGCTGCAATAAAAGTGCAAAGTAAATGTCCCACCTGCAGGAAAAGGGTTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTAA 636 0.4387 MSTQPFRGAAVRSYRRRKTVLNLDLNCFPPSENQEQERPLTQLVPQEVQDGQQPVVVQPVMIDVEAIEDDVVESSARAFAEARNNLRRNRRRTIVDVDSEEWPGGTNNSHKKRRRNSPNQTIINCDLYINLEGSSSSMKDSLIKPPEPPKDPVFNCPICMGPLVEEMSTRCGHIFCKNCIKAAIKVQSKCPTCRKRVTVKELIRVFLPSTS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0508 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 209 IPR013083 -
Dere11g0508 211 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Dere11g0508 211 SMART ring_2 156 193 IPR001841 -
Dere11g0508 211 SUPERFAMILY RING/U-box 155 200 - -
Dere11g0508 211 PANTHER ELFLESS, ISOFORM B 10 211 - -
Dere11g0508 211 Pfam Zinc finger, C3HC4 type (RING finger) 155 193 - -
Dere11g0508 211 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0508 Dere-ChrDere11 8481000 8484885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0508 12 210 C3H Transcription Factor Family AT5G48655 50.732 1.91e-49 158