Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0497 ATGTCGAAGGACACACAGAGAGAAAGAAAGAGGGCCAGAAAAACCCAGAATTGGGAGGGGGCTTTTACGCCTTCTCGTCTTGTGTTGGAAATAGTAGAAGAATCTCCACCCATGGCATTCCGTTATTCTCGATGCTTCCATAGGGGCCTCTTTGTGGATAATAGTGGTTCACGTGCATTTGAGATTTGTTTAATCCCAAGATACATATACAGAAATTGGAGGCTGTTATGGAGAGATACTATATCCAGCTCCTTTCGGTTTTATAGACTTTTCTCAATTCATGCCGCTGTGGGCTACTGTGTTGCTCTTATATTCACGCCAGAGAATCCAGCTTGCAAGAAGTGTTTTGTTAAGTTGTTATTGTCCATCCAGAAATTGACCTATATGGCTGTTCCGAAAGTGGACAACATGATGCTTCAGGCACTTGAAGAAATGGGATTTCCAAAGGCACGGGCAACACGAGCACTTCATTATTCTGGCAATACTAGTGTAGAGGATGCTATAAATTGGATCATTGATCATGAGAATGATCCTGATATTGATGAGATGCCATTGGTAGATGTGGATATCGAGATTGATTCTTCTCAACCATTCACTATCACAGAAGAAATGAAAATCAAAGCACAGAAGTTAAGGGAACAATTGCATAAGAGTAAAGAGGAGGAAGAGAAAAGATTCGAGAGAGAAAGGGAGAAGGAGAGGATCCAAGCAGGTAAGAAGCTCAATGAGATGAAGCGAATTGCTGAAGAAAATGAAAGACAACGGTATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAAAATAAGACAGAAATTAGAACAGGATAAGAAAAACAGAAGGTCTAAGCTTGGATTACCCCTTGAAGGTGATATAGCTGTGAAATCTTCAGCTTCTTCTGTACAGAAAGAGAAGGATTCAAAGCCTGTTTACACAGTTACAAAAGTTGAGCTATTGAGAGAATATTTGAGGTCTCTCAAGAATCACCACCAGAGTGAGCATGCAAGAGTCAGAAGGGCCTTTGAAACACTCCTAATTTATGTTGGAAATGTTGTCAAGAATCCCAATGAGGAAAAATACAGGAAAATCCGACTGAGCAACCCATTATTCCTGGATAGAGTTGGGAATTTGAAGGGAGGTGTGGACTTTCTTGAACTATGTGGGTTTGAGAGAATGGGTGACTTCTTGTACCTTCCTCATGAAAAAGTTGACATAACAGTCCTAAATTCAGCTGGTCTTGTGTTGAAGTCTGCAATTACAAATCCCTACTTTGGACTATTAAGTACTTAG 1305 0.4054 MSKDTQRERKRARKTQNWEGAFTPSRLVLEIVEESPPMAFRYSRCFHRGLFVDNSGSRAFEICLIPRYIYRNWRLLWRDTISSSFRFYRLFSIHAAVGYCVALIFTPENPACKKCFVKLLLSIQKLTYMAVPKVDNMMLQALEEMGFPKARATRALHYSGNTSVEDAINWIIDHENDPDIDEMPLVDVDIEIDSSQPFTITEEMKIKAQKLREQLHKSKEEEEKRFEREREKERIQAGKKLNEMKRIAEENERQRYIALRKAEKEEEKRAREKIRQKLEQDKKNRRSKLGLPLEGDIAVKSSASSVQKEKDSKPVYTVTKVELLREYLRSLKNHHQSEHARVRRAFETLLIYVGNVVKNPNEEKYRKIRLSNPLFLDRVGNLKGGVDFLELCGFERMGDFLYLPHEKVDITVLNSAGLVLKSAITNPYFGLLST 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0497 434 Coils Coil 260 284 - -
Dere11g0497 434 PANTHER F13M7.16 PROTEIN 128 432 - -
Dere11g0497 434 Gene3D - 324 422 - -
Dere11g0497 434 Pfam UBA/TS-N domain 136 171 IPR015940 -
Dere11g0497 434 SMART uba_6 135 173 IPR015940 -
Dere11g0497 434 Pfam PUB domain 341 409 IPR018997 -
Dere11g0497 434 CDD UBA_PUB_plant 134 181 - -
Dere11g0497 434 Gene3D - 135 181 - -
Dere11g0497 434 Coils Coil 201 236 - -
Dere11g0497 434 SUPERFAMILY UBA-like 133 185 IPR009060 GO:0005515
Dere11g0497 434 SUPERFAMILY PUG domain-like 317 428 IPR036339 -
Dere11g0497 434 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 133 174 IPR015940 -
Dere11g0497 434 SMART PGNneu 344 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0497 Dere-ChrDere11 8383992 8396764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0497 129 432 C2H2 Transcription Factor Family AT1G04850 60.390 1.24e-101 304