Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0485 ATGCCATTAGCGGATAGCACCCGAGACTCGCTAGCCGGATTAACTCTCGACGACGTGTTAGCCAACCGAGCCGCCGCGTCGAGCCAACAGCTCACAAGCCGACGAACCCTCCTTGACATCATCCGTGAAGACGAGTCCACCAAGAAGGATCGCAAGTCTTGGAAAGCCTTCAAGGACAAGATTCGGCTCAAGCGTGCGGGATCTGCTTGGACCTCCTCCATTCTTATCCCAGCTTCGGATATCCCTATCCCGATCAAGAATAGCAGAAACCTTTACACACAGCTCCCCCGTCGTAGCTCCGTGAGAGTCCTTACCTTCTCTCCGTTGGACGTCACGACTCACCAAATGGCCGGTCCCACCGAATCCGACGGCCCTGCCCCCACAATCACGCGCCAGTCCTCCACCCGCCAGATCGGCGATGCCTCCTTCGGCGACGACAAACTCAGGCCACAAGTTAACTCCGCTCGCCTGGCGGCGGCGGTGCGCGCGGACTCCATCCGGCGAGAGCGCGTGGTGACTTTCCGAGATAGCAATGACAGTGACGACGAAGACGACGAGGGGATATTACGCCAGCCGAGGGTTGAGGAGAGGCAGATGTCTGCCAGAGAGGCTGTGGCTGCGCAGGAGGCGGCGGAGGCAGCGGCGGCGGCCGACGAGGACGAAGAAGAGGAAGAGGAAGAGGATGACGATGAGTCGTCGGGGTTCGGAGCCGGCGGGATGACGATGTCGCTGATGGACTTGTTGGAGGAGACGGACAGGCAAATGGGACTTGAAGGATCGAGGTACAGAATGGAAGATGACGACGACGATGAGTTTGATGACGAGGAAGAAGAAGAAGAGGAAGAAGGAGGTGAAGAGCACGATTGCTGCGTGTGCATGGTGAAGCATAGAGGCTCGCCGTTTGTGCCGTGTGGGCACGCGTTTTGTAGAATGTGCTCGAGGGAGCTCACTGTGAGCAAGGGGAATTGCCCTCTCTGCAACAATTTCATTCTGGAAATTCTTGAGGTTTTCTGA 1014 0.5759 MPLADSTRDSLAGLTLDDVLANRAAASSQQLTSRRTLLDIIREDESTKKDRKSWKAFKDKIRLKRAGSAWTSSILIPASDIPIPIKNSRNLYTQLPRRSSVRVLTFSPLDVTTHQMAGPTESDGPAPTITRQSSTRQIGDASFGDDKLRPQVNSARLAAAVRADSIRRERVVTFRDSNDSDDEDDEGILRQPRVEERQMSAREAVAAQEAAEAAAAADEDEEEEEEEDDDESSGFGAGGMTMSLMDLLEETDRQMGLEGSRYRMEDDDDDEFDDEEEEEEEEGGEEHDCCVCMVKHRGSPFVPCGHAFCRMCSRELTVSKGNCPLCNNFILEILEVF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0485 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 337 IPR013083 -
Dere11g0485 337 ProSiteProfiles Zinc finger RING-type profile. 289 327 IPR001841 -
Dere11g0485 337 SUPERFAMILY RING/U-box 288 333 - -
Dere11g0485 337 MobiDBLite consensus disorder prediction 214 233 - -
Dere11g0485 337 MobiDBLite consensus disorder prediction 186 202 - -
Dere11g0485 337 MobiDBLite consensus disorder prediction 113 149 - -
Dere11g0485 337 PANTHER OS01G0917900 PROTEIN 7 337 - -
Dere11g0485 337 MobiDBLite consensus disorder prediction 174 240 - -
Dere11g0485 337 MobiDBLite consensus disorder prediction 113 140 - -
Dere11g0485 337 Pfam Zinc finger, C3HC4 type (RING finger) 286 330 - -
Dere11g0485 337 Coils Coil 207 228 - -
Dere11g0485 337 MobiDBLite consensus disorder prediction 258 286 - -
Dere11g0485 337 SMART ring_2 289 326 IPR001841 -
Dere11g0485 337 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0485 Dere-ChrDere11 8237103 8238116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0485 1 337 C3H Transcription Factor Family AT3G07120 42.742 2.64e-55 182