Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0458 ATGGCCTTGCAGGGAACGGAGGACGCACACGAAGATGCAAATGTTGCCGACAATGAAGAGGAAGAATTCTCTGAATCCTTTGTTTGCTGCGTGTGTCTGGATCTACTATACAAGCCCATTGTACTTCCATGTGGTCACATATCCTGTTTCTGGTGTGTTCATCTAGCAATGAACTCTCTGTGTGAGTCTCATTGTCCAATTTGTAGGCATCCATATTATCACTTTCCAACAATCTGTCAGATGCTTCACTTTTTGCTTCTGAAGATGTATCCCGTTGCTTACAAGAGAAGGGAAAAACAAACACTTGAGGAAGAAAAGGAACGGGGCTGTTTCTCTCCTCAATTTGATGATGATACATGTGTATCAGAAGCTGAGTTTGACCATCCAGGTACTTCGTCTTCCTGCAATACTGGAAATCAGGTTTCCAACTCACTGAATGCAGGATCTTCTGCATGTATGGAGCAATCTGCGTCTGGAACCCATAAGCAACATATTTTTTATGGAACTCCTGAAGCTTTAGGGACTCGTTCTATTGAAGGAAGAAATTTTCCTGGGAATGAGCGCTGTAGGCAACAGAAGATTTCAATTGCAGATGTGATGTGTATGGGATGCAAGCAACTGCTCTTTAATCCTGTTGTTCTTAATTGTGGTCACGTATACTGTGAGTCTTGCATCAAGAACTTAGCTGATGAGATGCTTAGATGCCAAACTTGTCAGAGTCCACATCCAAGAGGTTTTCCAAAAGTTTGTTTGGAGCTTGATCACTTTTTAGAGGAGCAATTTACTGAAGAATATGCAAAGAATAGAGATTCTGTTCAAGTTAGGCATAACAAAGACAAACCTGAAACCCCTTCTTGTTCATCAGACAAGGGTGGAGAAGAAAAGATAGCATGGTGGTCTGGTCCTCAGTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGTGGGATGTATCCTATAGTTGGGGATAGATATAAATGCAAAGACTGTAAGGAGAAGATTGGTTTTGATCTTTGTGGTGATTGTTACAAGAGTCGTGGCAAACTTCCTGGTCGGTTCAATCAGCAGCACACCCCAGAACATGAGTTTGAGCATATACATATGAATTGTATCCGTAATATAATGTGGCTGGTTACTGGACAGTTGGGGGAAGTTTCTACTGAAAATGTGCCTTTGGAAATTTTAGAATATAGAGCTGAAGATCCGAACTTGATTGATGATGATGAGGAGAATAACGATGATGATGACGATGATGGAGAAGATACCCAGAATGACTCTGAAGGCACCAATTGA 1293 0.413 MALQGTEDAHEDANVADNEEEEFSESFVCCVCLDLLYKPIVLPCGHISCFWCVHLAMNSLCESHCPICRHPYYHFPTICQMLHFLLLKMYPVAYKRREKQTLEEEKERGCFSPQFDDDTCVSEAEFDHPGTSSSCNTGNQVSNSLNAGSSACMEQSASGTHKQHIFYGTPEALGTRSIEGRNFPGNERCRQQKISIADVMCMGCKQLLFNPVVLNCGHVYCESCIKNLADEMLRCQTCQSPHPRGFPKVCLELDHFLEEQFTEEYAKNRDSVQVRHNKDKPETPSCSSDKGGEEKIAWWSGPQSKVHIGVGCDFCGMYPIVGDRYKCKDCKEKIGFDLCGDCYKSRGKLPGRFNQQHTPEHEFEHIHMNCIRNIMWLVTGQLGEVSTENVPLEILEYRAEDPNLIDDDEENNDDDDDDGEDTQNDSEGTN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0458 430 Gene3D - 300 367 IPR043145 -
Dere11g0458 430 SUPERFAMILY RING/U-box 20 79 - -
Dere11g0458 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 97 IPR013083 -
Dere11g0458 430 Pfam RING-type zinc-finger 201 229 IPR027370 -
Dere11g0458 430 ProSiteProfiles Zinc finger RING-type profile. 201 239 IPR001841 -
Dere11g0458 430 MobiDBLite consensus disorder prediction 268 291 - -
Dere11g0458 430 FunFam E3 ubiquitin-protein ligase PRT1 20 115 - -
Dere11g0458 430 MobiDBLite consensus disorder prediction 398 430 - -
Dere11g0458 430 ProSitePatterns Zinc finger RING-type signature. 216 225 IPR017907 -
Dere11g0458 430 SUPERFAMILY RING/U-box 298 367 - -
Dere11g0458 430 PANTHER UNCHARACTERIZED 16 369 - -
Dere11g0458 430 MobiDBLite consensus disorder prediction 268 289 - -
Dere11g0458 430 FunFam E3 ubiquitin-protein ligase PRT1 301 366 - -
Dere11g0458 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 294 IPR013083 -
Dere11g0458 430 FunFam E3 ubiquitin-protein ligase PRT1 188 283 - -
Dere11g0458 430 MobiDBLite consensus disorder prediction 402 424 - -
Dere11g0458 430 Pfam Zinc finger, ZZ type 308 345 IPR000433 GO:0008270
Dere11g0458 430 SUPERFAMILY RING/U-box 198 260 - -
Dere11g0458 430 ProSiteProfiles Zinc finger ZZ-type profile. 307 371 IPR000433 GO:0008270
Dere11g0458 430 SMART ring_2 29 68 IPR001841 -
Dere11g0458 430 SMART ring_2 201 238 IPR001841 -
Dere11g0458 430 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0458 Dere-ChrDere11 7733547 7741023 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0458 14 69 C3H Transcription Factor Family AT1G74990 40.351 9.23e-08 49.3