Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0448 ATGAATTGCTTCTCATGTTTTTCAGACCCAGAAAAGAGAGCCCCAAAGAAGGCCAACAGTGGAAGGAAGATACAGTCACCTGTATCTCCATCGCCTCTCCCATTTGAAGCCCCACCTCAGCCTCGCCATGAGAACAATAACCTTAGGCGAAAGCCCACTCCACAACCAACAGAACCTGCAACAAATAACAAGGATGCTAACAAAAACACAAGCAACAACAACACCAACATTAATTCACAAACCTTCACCTTCCGGGATCTGGCAGTGGCAACGAAGAACTTCCGGCAAGAAACCCTAATCGGCGAAGGCGGATTCGGAAGAGTTTATAGAGGGCGAATCGGAAAAACCAACAAGATTGTAGCTGTGAAGCAGCTTGACAGGAATGGATTGCAAGGGAATAGAGAGTTTCTGGTTGAAGTGTTGATGTTGAGCCTCTTACACCATGAAAATCTAGTGAACCTTGTTGGGTATTGCGCTGATGGAGATCAGAGACTTCTGGTATACGAGTACATGCCTTCAGGATCTGTAGAGGATCATCTTCTCGATGTTCCACCAAATCAAAAGCCACTAAGTTGGGCCTTGAGGATGAAAATAGCATTGGGAGCAGCCAAAGGTGTAGAATACTTGCATGACAAGGCCAATCCCCCTGTGATCTATAGAGACTTGAAAACAGCCAACATTTTGCTGGATGAGAATTTTAATGCTAAACTCTCCGATTTCGGACTAGCCAAGCTCGGACCTACAGGAGACAAGTCTCATGTGTCCTCTAGAGTAATGGGAACTTATGGATATTGTGCTCCTGAGTATCAGAGAACTGGCCAACTCACTGTAAAATCAGATGTGTATAGTTTTGGAGTTGTTTTGCTCGAATTGATCTCCGGAAGAAGAGCCATTGACAACACGAGACCGACACGTGAGCAGAACCTTGTTTCTTGGGCACAACCAATATTCAAGGACCCTCATGGATACCCAGAACTAGCAGATCCTCTTCTGGAAGGAAACTATCCTGCAAGAGCACTGAACCAAGCAGTGGCAGTGGCAGCCATGTGCCTGCACGAGGAAGCATCCTCAAGGCCATTGATGAGCGATGTTGTGAGTGCTCTTAGCTTCCTCGGGACAGAACCTCACAGTATTACTTCCTCACCAACTAATCATGAGCTACAACTGGAACAAAACGCACCGTATTTGAATCTTCTTGATGATGATACTGCTTTTGAACGCCAACAATCAGCTGCTAAAGAACCCAATGAGGTTCATTGGGATTTAACTACTGCTAATTAA 1281 0.4543 MNCFSCFSDPEKRAPKKANSGRKIQSPVSPSPLPFEAPPQPRHENNNLRRKPTPQPTEPATNNKDANKNTSNNNTNINSQTFTFRDLAVATKNFRQETLIGEGGFGRVYRGRIGKTNKIVAVKQLDRNGLQGNREFLVEVLMLSLLHHENLVNLVGYCADGDQRLLVYEYMPSGSVEDHLLDVPPNQKPLSWALRMKIALGAAKGVEYLHDKANPPVIYRDLKTANILLDENFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELISGRRAIDNTRPTREQNLVSWAQPIFKDPHGYPELADPLLEGNYPARALNQAVAVAAMCLHEEASSRPLMSDVVSALSFLGTEPHSITSSPTNHELQLEQNAPYLNLLDDDTAFERQQSAAKEPNEVHWDLTTAN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0448 426 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g0448 426 FunFam Serine/threonine-protein kinase PBS1 64 170 - -
Dere11g0448 426 MobiDBLite consensus disorder prediction 50 79 - -
Dere11g0448 426 Gene3D Transferase(Phosphotransferase) domain 1 171 389 - -
Dere11g0448 426 Pfam Protein kinase domain 95 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g0448 426 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g0448 426 MobiDBLite consensus disorder prediction 1 79 - -
Dere11g0448 426 SUPERFAMILY Protein kinase-like (PK-like) 80 387 IPR011009 -
Dere11g0448 426 CDD STKc_IRAK 100 368 - -
Dere11g0448 426 PANTHER OS07G0668900 PROTEIN 25 379 - -
Dere11g0448 426 Gene3D Phosphorylase Kinase; domain 1 57 170 - -
Dere11g0448 426 FunFam Serine/threonine-protein kinase PBS1 171 386 - -
Dere11g0448 426 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Dere11g0448 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0448 Dere-ChrDere11 7490698 7495371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0448 1 413 Glycoside Hydrolase AT3G07070 64.734 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Dere11g0448 Pkinase 7.1e-47 CL0016