Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0437 ATGGTGCTGATAGAACAGGATGAGATCGAGGAGCAAGTAGAGAAGCCCTCTGAAACCGCGAAACCTGCTAAACCATCGGCCTCCTCCAATGCCGATGCCAATAAGGAGGCTTCCGATGGCTTTGAAACCGCCAGCGACGCCGAGCTCGGCAGCGACGGAGAGGATGACGACGCCGGAGCTTGCAGTCGGGGTGTGGATGCGCATAAAGAACAGGGACAACAACATCAACATCAGGAGCAGGGGATTCCTCCGACAAGTGAGTCTTCCGAAGAAGCATCGCGCGACGAGGAATTGAAACAGAAAGCATTGGCTCAAGCAAATGATGCAAAACTCGAAGGGAATAAGCTATTTGGAAATGGCCAATATGAGGATGCACTATCAAAGTATGAATTTGCTTTACAAATTGCTCCAGACATGCCTGCGTCTGCGGAAATACGCTCAATATGCCATTCTAACCGTGCTGTATGCTTTATGAAATTGGGGAAATATGAAGACACCATCAAAGAATGCACTAAAGCATTAGAACTCAATCCTGCATACGTGAAAGCTTTGGTGAGAAGAGGTGAGGCTCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCTAATGATCAAGCTGGGAAAACCATTCGGCGACTGGAACCCCTGGCAGCGGCAAAGCGGGAAAAGATGAAGGAAGAAATGATTGGTAAACTGAAAGAAATGGGCAATTCTTTGTTGGGCCGCTTCGGGATGAGCGTCGACAACTTCAAAGCTGTTCAAGATCCAAACACTGGTTCCTATTCTATCCAATTCCAACGCTAA 837 0.4707 MVLIEQDEIEEQVEKPSETAKPAKPSASSNADANKEASDGFETASDAELGSDGEDDDAGACSRGVDAHKEQGQQHQHQEQGIPPTSESSEEASRDEELKQKALAQANDAKLEGNKLFGNGQYEDALSKYEFALQIAPDMPASAEIRSICHSNRAVCFMKLGKYEDTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQAGKTIRRLEPLAAAKREKMKEEMIGKLKEMGNSLLGRFGMSVDNFKAVQDPNTGSYSIQFQR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0437 278 ProSiteProfiles TPR repeat profile. 147 180 IPR019734 GO:0005515
Dere11g0437 278 Gene3D Tetratricopeptide repeat domain 64 245 IPR011990 GO:0005515
Dere11g0437 278 MobiDBLite consensus disorder prediction 1 98 - -
Dere11g0437 278 SUPERFAMILY TPR-like 105 218 IPR011990 GO:0005515
Dere11g0437 278 ProSiteProfiles TPR repeat profile. 181 214 IPR019734 GO:0005515
Dere11g0437 278 SMART tpr_5 147 180 IPR019734 GO:0005515
Dere11g0437 278 SMART tpr_5 181 214 IPR019734 GO:0005515
Dere11g0437 278 SMART tpr_5 106 139 IPR019734 GO:0005515
Dere11g0437 278 Pfam Tetratricopeptide repeat 182 214 IPR013105 -
Dere11g0437 278 MobiDBLite consensus disorder prediction 22 36 - -
Dere11g0437 278 MobiDBLite consensus disorder prediction 56 75 - -
Dere11g0437 278 Pfam Tetratricopeptide repeat 149 179 IPR001440 GO:0005515
Dere11g0437 278 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 38 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0437 Dere-ChrDere11 7255180 7259175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0437 41 237 Calmodulin-binding Proteins AT3G25230 33.784 1.83e-17 80.1