Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0436 ATGCCTACCCATACGCAACGGTCCCGGGATGGACGAGAACAAGGCGAGAGGGGAACAGCCAGCGTGTCAGAGAGAGAGAGGGTCTGGCACAAACACAGAGAGAGAGAAGCAGAGACATTACAGAGAGAGAAAGGAATAGCAGAAGCAATAATGGAGGTTTCTGTGAAATGGTTCATCGTTTTCGTTCTGACTATAGCGCTGCTTTTATCTAGCGTCAAGCCACTGAATGGGAATGAGAATGAGGAAGAGAAAGACCGCCTTGTACAGTCAAGGAATGTAGAAACAGGGGAGTTGCAGAGGTTGAAGAATTCATCCATGGCGGCCAGGTCAGATGATACTTTAAGTAGGCATGCAGCCGATGATCCAGAGCAGATAGCTACCATGGTTGATATGACCATGCGCAATTATACGGAAAGAAGGAATCTGGGCTTCTTCTCGTGTGTGACTGGCAATCCAATTGATGACTGCTGGCGCTGTGACAAACTTTGGCACAAACGGCGAAAGCGTTTGGCTGATTGTGGAATTGGCTTTGGACGTAATGCCATTGGTGGCCGTGACGGACGATTCTATATTGTGACTGACCCAAGTGATGACGACCCTGTCAACCCAAGACCAGGAACTCTACGCCATGCCGTTATTCAAGAAAGACCCTTATGGATTGTGTTCAAGAGAGACATGGTTATCACCCTGAAGCAAGAGCTTATTATGAATAGCTTCAAGACCATTGATGGTCGTGGAGTCAACGTGCACATTGCTTTTGGGGCTTGCGTTACTATTCAATTCATCACCAATGTCATCATCCATGGCTTGCATATCCATGACTGCAAGAGCACCGGTAACGCTATGGTTCGTAGCTCACCAACACATTATGGATGGAGGACTATGGCTGATGGGGATGGGATTTCCATCTTTGGTTCCAGCCACATTTGGATTGACCATAACTCGCTATCTAATTGCGCTGATGGCCTTATTGATGCTATTATGGGCTCCACTGCCATCACCATTTCCAACAATTACTTTACCCACCACAATGAGGTTATGCTACTGGGTCATAGTGATTCATATGTAAGAGATAAGCAGATGCAAGTGACCATTGCCTACAACCATTTTGGGGAGGGTCTTATCCAAAGAATGCCAAGGTGCAGACATGGGTATTTCCACGTCGTAAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTAATCCCACAATTAACAGTCAAGGCAACCGATACCTGGCCCCTAAAAATTCTTTTGCTAAGGAGGTCACAAAGAGAGTGAATACAGACACAAGCGTCTGGCGGCATTGGAATTGGAGGTCAACGGGAGACCTTATGCTGAATGGAGCCTTTTTCACTTCATCAGGTGCTGGAGCTGCCGCAAGCTATGCCAGAGCCTCCAGTTTAGGGGCCAAATCGTCATCTATGGTTGGTGTCCTCACATCTGGTGCTGGTGTTCTTAACTGCCGCAGGGGCTACACCTGTTAA 1500 0.4733 MPTHTQRSRDGREQGERGTASVSERERVWHKHREREAETLQREKGIAEAIMEVSVKWFIVFVLTIALLLSSVKPLNGNENEEEKDRLVQSRNVETGELQRLKNSSMAARSDDTLSRHAADDPEQIATMVDMTMRNYTERRNLGFFSCVTGNPIDDCWRCDKLWHKRRKRLADCGIGFGRNAIGGRDGRFYIVTDPSDDDPVNPRPGTLRHAVIQERPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAFGACVTIQFITNVIIHGLHIHDCKSTGNAMVRSSPTHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPKNSFAKEVTKRVNTDTSVWRHWNWRSTGDLMLNGAFFTSSGAGAAASYARASSLGAKSSSMVGVLTSGAGVLNCRRGYTC 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0436 499 PRINTS Pollen allergen Amb family signature 441 465 IPR018082 -
Dere11g0436 499 PRINTS Pollen allergen Amb family signature 173 190 IPR018082 -
Dere11g0436 499 PRINTS Pollen allergen Amb family signature 399 418 IPR018082 -
Dere11g0436 499 PRINTS Pollen allergen Amb family signature 233 249 IPR018082 -
Dere11g0436 499 PRINTS Pollen allergen Amb family signature 297 318 IPR018082 -
Dere11g0436 499 PRINTS Pollen allergen Amb family signature 470 493 IPR018082 -
Dere11g0436 499 PRINTS Pollen allergen Amb family signature 377 396 IPR018082 -
Dere11g0436 499 PRINTS Pollen allergen Amb family signature 197 222 IPR018082 -
Dere11g0436 499 Gene3D - 150 492 IPR012334 -
Dere11g0436 499 PANTHER PECTATE LYASE 18-RELATED 119 496 IPR045032 GO:0030570
Dere11g0436 499 FunFam Pectate lyase 150 492 - -
Dere11g0436 499 Pfam Pectate lyase 234 414 IPR002022 -
Dere11g0436 499 SMART amb_all 225 422 IPR002022 -
Dere11g0436 499 MobiDBLite consensus disorder prediction 1 30 - -
Dere11g0436 499 MobiDBLite consensus disorder prediction 102 121 - -
Dere11g0436 499 SUPERFAMILY Pectin lyase-like 129 494 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0436 Dere-ChrDere11 7230656 7236167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0436 90 499 Polysaccharide Lyase AT4G13710 78.230 0.0 692