Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0426 ATGGTTTTTACCTCCATCCCAGCTTATCTTGATCCAGCCAACTGGCAGCAACAGTATCCCAATCATCTCACGGGCAGTACTGCCGGCGGCACGAGCTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTCTCTCGTCGCCACAGCCACCACCTCCGGCACCGCCCACACAACCTCACGGAGCAGGCGGCACGGGCTCGATCAGGCCAGGGTCTATGGCTGATCGAGCCCGGATGGCCAACATACCGATGCCGGAGGCTCCACTGAAATGCCCGAGATGCGAATCTACGAACACCAAATTCTGCTACTACAACAACTACAGCCTCACTCAGCCCCGCCACTTCTGTAAGACGTGTCGGAGGTACTGGACCCGAGGCGGCGCTCTGAGGAATGTGCCCGTTGGAGGAGGGTGCCGAAGGAACAAGAGAAGCAAAGGAAGCAGCTCCAAATCACCGGCGAGCTCAGATCGTCAAGCAGGGAGCACTAGTTCCACGAACTCGGTTTCTTCTAACAGTGGTTCTGCCGGTGACATAATAGGCCTTGCCCCTCACGCGCCACCACTGAGATTCATGTCTCCGTTGCTTGGTGATTTTGTTGCTGGTGGAGAGATGGGATTAAACTATGGCCTTAATTATAACTCAATTTCAGCACCAATGGGAGGAGTAGGCGACTTAAATTTCCAGATAAGAAGTGCTTTAGGTGGCGGAGGAAGCGGCGGCACTGCCGCAGGAAGCAGCAGTGAGTCTATCTTATTTGCTACTGGTTTGGATCAATGGCGGGTGCCACAAACTCAGCAATTTCCCTTCTTGCCTGGATTGGAAGCCTCACCGGCTGGATTGTACCAATTTGAAGTTGGTGCCGCCGATGGACAGGGATACGGCGTGGCGAGCCTCCAGCCAAAGATGTCGACTTCCGGGGTGATAGCTCAGCTGGCATCGGTGAAAATGGAAGACAATCAGCAGCTGAATCTGTCAAGGCAGTTCTTAGGAAGTGAGCACTATTGGGGTACTGGTAGTACTACTCCTGCTTGGACTGAACTTTCTGGATTTAGCTCTTCTTCCACTACTAGCAACCCACTATAG 1080 0.5398 MVFTSIPAYLDPANWQQQYPNHLTGSTAGGTSSQQQQQQQQQLLSSPQPPPPAPPTQPHGAGGTGSIRPGSMADRARMANIPMPEAPLKCPRCESTNTKFCYYNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPASSDRQAGSTSSTNSVSSNSGSAGDIIGLAPHAPPLRFMSPLLGDFVAGGEMGLNYGLNYNSISAPMGGVGDLNFQIRSALGGGGSGGTAAGSSSESILFATGLDQWRVPQTQQFPFLPGLEASPAGLYQFEVGAADGQGYGVASLQPKMSTSGVIAQLASVKMEDNQQLNLSRQFLGSEHYWGTGSTTPAWTELSGFSSSSTTSNPL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0426 359 MobiDBLite consensus disorder prediction 20 44 - -
Dere11g0426 359 MobiDBLite consensus disorder prediction 146 172 - -
Dere11g0426 359 ProSiteProfiles Zinc finger Dof-type profile. 88 142 IPR003851 GO:0003677|GO:0006355
Dere11g0426 359 ProSitePatterns Zinc finger Dof-type signature. 90 126 IPR003851 GO:0003677|GO:0006355
Dere11g0426 359 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 169 IPR045174 GO:0003700|GO:0006355
Dere11g0426 359 Pfam Dof domain, zinc finger 87 142 IPR003851 GO:0003677|GO:0006355
Dere11g0426 359 MobiDBLite consensus disorder prediction 20 71 - -
Dere11g0426 359 MobiDBLite consensus disorder prediction 132 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0426 Dere-ChrDere11 7101763 7103049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0426 1 331 C2C2-Dof Transcription Factor Family AT5G02460 41.333 7.00e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere11g0426 zf-Dof 2.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0343 12 5801908 5803250 Dere11g0426 11 7101763 7103049 CCT