Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0399 ATGAGCTCCACTTTGATTCCCGCCACTTCTCTTCTAGCAGAGCATATGGCTGAGGTGAAATCAGAGGAGTGTTGTCTGGAGAATAAGCAATCTATTGCTGCTTCTAGCTCCTCTATATCTGAAAGCAGTGGCAGTGGTTTACACAAGTCTTCGGGAATATGTAGCCCAGCATCAGCATCACCCTCTCATCGGAGAACTACTGGCCCTATAAGGCGTGCGAAGGGTGGTTGGACGGCACTAGAGGATGAGACATTACGGAATGCAGTTGCAGCTTTTAATGGAAAGAGTTGGAAGAAAATAGCTGAGTCTTTTCCTGATAGATCAGAAGTTCAATGTCTCCACAGGTGGCAAAAAGTTCTTAATCCAGAACTTGTTAAAGGACCTTGGACTCAGGAGGAGGATGATAAAATTGTTGAACTAGTGTCAAAATATGGGCCTACAAAGTGGTCCTTAATAGCCAAGTCTTTACCCGGTCGTATAGGGAAACAGTGCCGAGAGCGGTGGCACAATCATCTAAATCCTGACATCAAGAAGGATGCCTGGACTTTGGAGGAGGAATTAGCCCTTATGAATGCTCATCATATACATGGGAACAAATGGGCTGAAATTGCAAAGGTCCTGCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCATTGAAGAAAAAGTTGGATTTTTATTTAGCTACAGGAAAACTTCCACCAATTTCAAAGAACAGTCCCCAAGTTGTTGTCAAAGATACAATTATACGCTCTGCAACTAAAACAATTCTTGTTAGTTCAAATAAAGGATTAGATGCAACTGCTGAAACATCATCGGAAACTAGAGACATTAATAAGTTAGATGACAGTGGTACAAATCAGTTAGGGTCTTTAGCTACTGCAAGAGATGTTGGTGATTCTTCAAATTTTCTTGCAAATGAATCTGCTGATTCAGACTGTGTAGAATGCAAGCCCAGACTATCTAATATAGATTTAAGCTGTAGCAGCTCAGAACCATTATCAAGTGACAATTTTGGAATAAACAGTGAGTCAATGTTCGAGAAATCTGTACTCAGTGGCAAGCTAACAATTGAGCATTGTATGAATAATGGTGAAATGAGCAGTAGCAGGTTAATCACAAAATCTTTTTCGCAGGAAAGTCCAACCTGTGGTTCTTTATGTTATGAGCCACTGCATATGGAAAGTTCAGTTCCTTTAGATTCTCTTTATTTAAATATCTTTTGCCCTCAAAATGATTATAACTCCACTCCAATGTTGTCACCTGTTGGCTTCTTCACTCCACCTTGTGTGAAGGGTAGTGAGTTATTCACAGAGACTCCTGAATCAATATTGAAAATGGCTGCTAAAACTTACCCATATACTCCTTCCATATTAAGAAAGAGAAGGACTGGAGTCCAGACACAAGTCTCTCCCAGTAAAGTTGTGAAAGTTGGTGGTCAATCTCATGCTTCTAATTATCAGCAGAGATACAAGAATAATTCAGATTCTGAAGTTGGGAAGCTCTCTGAGAGTCCAGCAAGCCATGGCCATTGCAATGACAGTCCCAATAATAAGGCTTTCAATATATCTCCTCCCTACCGGTTAAGATCCAAGCGAACAGCAGTTGTCAAGTCTGTGGAGAAACAGCTTGAGTTTGCATTTGACCAAGAGAAACACAATGGAAATATCAGAAGAGTGGAAAAATATTCGAAGTAG 1707 0.406 MSSTLIPATSLLAEHMAEVKSEECCLENKQSIAASSSSISESSGSGLHKSSGICSPASASPSHRRTTGPIRRAKGGWTALEDETLRNAVAAFNGKSWKKIAESFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALMNAHHIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPISKNSPQVVVKDTIIRSATKTILVSSNKGLDATAETSSETRDINKLDDSGTNQLGSLATARDVGDSSNFLANESADSDCVECKPRLSNIDLSCSSSEPLSSDNFGINSESMFEKSVLSGKLTIEHCMNNGEMSSSRLITKSFSQESPTCGSLCYEPLHMESSVPLDSLYLNIFCPQNDYNSTPMLSPVGFFTPPCVKGSELFTETPESILKMAAKTYPYTPSILRKRRTGVQTQVSPSKVVKVGGQSHASNYQQRYKNNSDSEVGKLSESPASHGHCNDSPNNKAFNISPPYRLRSKRTAVVKSVEKQLEFAFDQEKHNGNIRRVEKYSK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0399 568 ProSiteProfiles Myb-like domain profile. 121 172 IPR001005 -
Dere11g0399 568 CDD SANT 77 120 IPR001005 -
Dere11g0399 568 SMART sant 125 174 IPR001005 -
Dere11g0399 568 SMART sant 177 225 IPR001005 -
Dere11g0399 568 SMART sant 73 122 IPR001005 -
Dere11g0399 568 SUPERFAMILY Homeodomain-like 123 219 IPR009057 -
Dere11g0399 568 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 176 IPR017930 -
Dere11g0399 568 MobiDBLite consensus disorder prediction 37 73 - -
Dere11g0399 568 SUPERFAMILY Homeodomain-like 75 130 IPR009057 -
Dere11g0399 568 Pfam Myb-like DNA-binding domain 74 120 IPR001005 -
Dere11g0399 568 Pfam Myb-like DNA-binding domain 178 221 IPR001005 -
Dere11g0399 568 Pfam Myb-like DNA-binding domain 126 172 IPR001005 -
Dere11g0399 568 CDD SANT 128 172 IPR001005 -
Dere11g0399 568 ProSiteProfiles Myb-like domain profile. 173 223 IPR001005 -
Dere11g0399 568 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 227 IPR017930 -
Dere11g0399 568 FunFam Transcriptional activator Myb isoform A 126 178 - -
Dere11g0399 568 MobiDBLite consensus disorder prediction 37 65 - -
Dere11g0399 568 CDD SANT 180 223 IPR001005 -
Dere11g0399 568 MobiDBLite consensus disorder prediction 466 527 - -
Dere11g0399 568 PANTHER MYB PROTEIN-RELATED 74 145 - -
Dere11g0399 568 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 120 IPR017930 -
Dere11g0399 568 Gene3D - 73 125 - -
Dere11g0399 568 FunFam Transcription factor MYB3R-2 179 243 - -
Dere11g0399 568 ProSiteProfiles Myb-like domain profile. 69 120 IPR001005 -
Dere11g0399 568 MobiDBLite consensus disorder prediction 466 529 - -
Dere11g0399 568 FunFam Transcriptional activator Myb isoform A 73 125 - -
Dere11g0399 568 Gene3D - 126 177 - -
Dere11g0399 568 Gene3D - 179 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0399 Dere-ChrDere11 6690615 6695163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0399 12 565 MYB Transcription Factor Family AT3G09370 48.319 2.30e-153 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere11g0399 Myb_DNA-bind_6 4.6e-18 CL0123