Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0392 ATGACTGAGGTTGAACTTTCTCGCTCAGAGAAGAAGAAGAAGAAGCACCATAATGATGAGCCATTTCAGAAGGACACCGACTTCATGATCAAGCCACAGAACTTCACTCCCTCCATCGATACCTCTCAGTGGCCAATACTCCTCAAGAACTACGACCGCCTCAATGTACGAACCGGACACTACACTCCCATCCCCTCCGGTTACTCCCCCCTCAAGCGTCCTCTTCCAGAGTACATCAAGTACGGCGTTCTCAATCTCGATAAGCCCGCGAACCCATCTTCGCACGAGGTCGTGGCTTGGATCAAACGGATCCTCCGGGTCGAGAAAACGGGTCATAGCGGTACCCTTGACCCGAAAGTCACAGGCAACCTCATTGTTTGCATTGATAGAGCGACCCGACTCGTGAAATCGCAACAGGGTGCCGGGAAAGAGTATGTGTGTGTTGCTCGATTGCATTCGAAGGTTCCTGAAGTTGCAAAAGTGGCTCGAGCGCTTGAAACGCTTACTGGGGCTGTGTTTCAGAGGCCACCATTGATTTCTGCGGTGAAGAGACAACTTAGGATTAGGACTATATATGAAAGTAAGCTTCTAGAGTATGACGCAGATAAGCATTTGGTTGTGTTTTGGATTTCGTGTGAAGCAGGTACGTATGTGAGGACTTTATGTGTTCATTTGGGTTTGATTCTGGGTGTGGGAGGGCATATGCAAGAGCTTAGAAGGGTGCGGTCTGGGATTTCGGGTGAGAAAGATAATATGGTTACTATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAGGGATGAGAGTTATTTAAGAAGGGTTATTATGCCTCTTGAAGTACTATTAACGAGTTATAAAAGATTAGTTGTGAAAGATTCAGCTGTTAATGCCATTTGTTATGGGGCAAAGTTGATGATTCCAGGTTTATTGAGGTTTGAGAATGATATTGAGGTGGGTGAGGAAGTTGTGCTTATGACTACCAAGGGCGAAGCAATTGCCTTGGGAATTGCAGAGATGACTACAGCTGTAATGGCTACTTGTGACCATGGTGTGGTGGCGAAGATTAAAAGGGTTGTGATGGATCGAGATACCTATCCTAGGAAATGGGGTCTTGGGCCGAAGGCATCCATGAAGAAGAAACTGATTGCAGCAGGGAAGCTAGATAAGCATGGGAAGCCAAACGAGAATACTCCTCAAGAGTGGCTGAGAAATGTGGTTCTACCGACTGGTGGAGATAGTATCATTGCAGGTATTGCTGCTTCAACTGCTGCAGATGAGAAGGAAAAGAAGAGTGATCAGGACGGGGAGGGGCGGAAGAGAAAAACAGTTGAAAGCAATGGTAGCCCTGTTTCTGCTCCCCATAAGAAGGTTAAAGTGGAAGAAGTTGAAACAGTTGAAGGGGAAAAATTAAAGGTGAAGAAGGTAAAAGAAGATCTTGTGGAGATTGAAGTTGAGAAGAAAAAAAAGGAGAAAAAGAAGAAAAAGGATAAAGAGAATGATGAAGTGGCATCTTCAGATGAGGAGAAAGCTGGAAAAGATAAGAAGAAGAAGAAGAAGAAGCACAAAGAAGAGGTAGAAGCCGCTTCAACAGATACTGAGAAGTCTGAGAAGAAGAAAAAGAAGAAGAAGGACAAAGATAGTGAAGATAAGGCTATTGACTTACCTGCAGAAGATGCTGATCAAAGTGAGAAGAAGAAGAAACATAAAAAGAAAAATTCAAAAGATGCAGAGGAGTAG 1746 0.4433 MTEVELSRSEKKKKKHHNDEPFQKDTDFMIKPQNFTPSIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLPEYIKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSKVPEVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGISGEKDNMVTMHDVMDAQWVYDNFRDESYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIAAGKLDKHGKPNENTPQEWLRNVVLPTGGDSIIAGIAASTAADEKEKKSDQDGEGRKRKTVESNGSPVSAPHKKVKVEEVETVEGEKLKVKKVKEDLVEIEVEKKKKEKKKKKDKENDEVASSDEEKAGKDKKKKKKKHKEEVEAASTDTEKSEKKKKKKKDKDSEDKAIDLPAEDADQSEKKKKHKKKNSKDAEE 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0392 581 Coils Coil 562 581 - -
Dere11g0392 581 CDD PseudoU_synth_hDyskerin 80 262 - -
Dere11g0392 581 FunFam H/ACA ribonucleoprotein complex subunit CBF5 74 280 - -
Dere11g0392 581 SMART DKCLD_2 40 98 IPR012960 -
Dere11g0392 581 CDD PUA_Cbf5 287 361 - -
Dere11g0392 581 Pfam DKCLD (NUC011) domain 41 98 IPR012960 -
Dere11g0392 581 Pfam TruB family pseudouridylate synthase (N terminal domain) 102 218 IPR002501 GO:0006396
Dere11g0392 581 Pfam PUA domain 289 361 IPR002478 GO:0003723
Dere11g0392 581 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 48 373 IPR004802 GO:0006396
Dere11g0392 581 MobiDBLite consensus disorder prediction 426 446 - -
Dere11g0392 581 SUPERFAMILY Pseudouridine synthase 41 286 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere11g0392 581 ProSiteProfiles PUA domain profile. 288 363 - -
Dere11g0392 581 Gene3D Pseudouridine synthase 74 280 - -
Dere11g0392 581 Coils Coil 468 511 - -
Dere11g0392 581 MobiDBLite consensus disorder prediction 421 473 - -
Dere11g0392 581 MobiDBLite consensus disorder prediction 523 568 - -
Dere11g0392 581 SMART pua_5 289 363 IPR002478 GO:0003723
Dere11g0392 581 MobiDBLite consensus disorder prediction 457 473 - -
Dere11g0392 581 Pfam tRNA pseudouridylate synthase B C-terminal domain 219 285 IPR032819 -
Dere11g0392 581 MobiDBLite consensus disorder prediction 1 26 - -
Dere11g0392 581 Coils Coil 521 541 - -
Dere11g0392 581 MobiDBLite consensus disorder prediction 487 516 - -
Dere11g0392 581 MobiDBLite consensus disorder prediction 487 581 - -
Dere11g0392 581 SUPERFAMILY PUA domain-like 288 369 IPR015947 -
Dere11g0392 581 NCBIfam uncharacterized domain 2 284 360 IPR004521 GO:0003723
Dere11g0392 581 Gene3D PUA domain 41 372 IPR036974 GO:0003723
Dere11g0392 581 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 8 525 IPR004802 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0392 Dere-ChrDere11 6623954 6625699 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0392 1 523 NAC Transcription Factor Family AT3G57150 77.143 0.0 726