Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0390 ATGACTGAGCTTGAAGTTGCTCGCTCTGAGAAGAAGAAGAAGAAGAAGCATCATAACAAAGAAGATAATGATGAGCCAACTCAGAAAGATACCGACTTCATGATCAAGCCACAGAGCTTCACTCCCTCGATCGATACTTCCCAGTGGCCGATACTCCTCAAGAACTACGACCGCCTCAATGTACGAACCGGACACTACACTCCTATTTCCTCCGGCTACTCCCCCCTCAAGCGTCCTCTTCCAGAGTACATTAAGTACGGCGTTCTCAATCTCGATAAACCCGCGAACCCATCTTCCCACGAGGTCGTAGCTTGGATCAAACGGATCCTCCGGGTCGAGAAAACGGGTCATAGCGGTACCCTTGACCCGAAAGTCACAGGCAACCTCATTGTTTGCATTGATAGAGCGACCCGACTCGTGAAATCGCAACAGGGTGCCGGGAAAGAGTATGTGTGTGTTGCTCGATTGCATTCGAAGGTTCCTGAAGTTGCAAAAGTGGCTCGAGCGCTTGAAACGCTTACTGGGGCTGTGTTTCAGAGGCCACCATTGATTTCTGCGGTGAAGAGACAACTTAGGATTAGGACTATATATGAAAGTAAGCTTCTAGAGTATGACGCAGATAAGCATTTGGTTGTGTTTTGGATTTCGTGTGAAGCAGGTACGTATGTGAGGACTCTATGTGTTCATTTGGGTTTGATTCTGGGTGTGGGTGGGCATATGCAAGAGCTTAGAAGGGTGCGGTCTGGGATTTCGGGTGAGAAAGATAATATGGTTACTATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAGGGATGAGAGTTATTTAAGAAGGGTTATTATGCCTCTTGAAGTACTATTAACGAGTTATAAAAGATTGGTTGTGAAAGATTCAGCTGTTAATGCCATTTGTTATGGGGCAAAGTTGATGATTCCTGGGTTATTGAGGTTCGAGAATGATATTGAGGTGGGTGAGGAAGTTGTGCTTATGACTACCAAGGGCGAAGCAATTGCCTTGGGAATTGCAGAGATGACTACAGCTGTAATGGCTACTTGTGACCATGGTGTGGTGGCGAAGATTAAAAGGGTTGTGATGGATCGAGATACCTATCCTAGGAAATGGGGTCTTGGGCCGAAGGCATCCATGAAGAAGAAACTGATTGCAGAGGGGAAGCTAGATAAGCATGGGAAGCCAAACGAGAATACTCCTCAGGAGTGGCTGAGAAATGTGGTTCTACCGACTGGTGGAGATAGTATCATTGCAGGTATTGCTGCTTCAACTGCTGTAGAGGAGAAGGAAAAGATCAAGAATGATCAGGATGGGGAGGGGCGGAAGAGAAAAACAGTTGAAAGCAATGGTAGCCCTGTTTCTGCTCCCCATAAGAAGGTTAAAGTTGAAGAAGTTGAAACAGTTGAAGGGGAAAAATTAAAGGTGAAGAAGGTAAAAGAAGATGTTGTGGAGATTGAAGTTGAGAAGAAAAAAAAGGAGAAAAAGAAGAAAAAGGATAAAGTGAATGATGAAGCGGCATCTTCAGATGAGGAGAAAGCTGGAAAAGATATGAAGAAGAAGAAGAAGCACAAAGAAGAGGTAGAGGCTGCTTCACCAGATTCTGAGAAGTCTGAGAAGAAGAAGAAAAAGAAGAAGGTCAAAGATAGTGAAGATAAGGCGTTTGAGTTACCTACAGAGGATGCTGATCAAAGTGAGAAGAAGAAGAAACATAAAAAGAAAAAATCCAAAGATGCAGAGGAGGAGTAG 1764 0.4433 MTELEVARSEKKKKKKHHNKEDNDEPTQKDTDFMIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPISSGYSPLKRPLPEYIKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSKVPEVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGISGEKDNMVTMHDVMDAQWVYDNFRDESYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIAEGKLDKHGKPNENTPQEWLRNVVLPTGGDSIIAGIAASTAVEEKEKIKNDQDGEGRKRKTVESNGSPVSAPHKKVKVEEVETVEGEKLKVKKVKEDVVEIEVEKKKKEKKKKKDKVNDEAASSDEEKAGKDMKKKKKHKEEVEAASPDSEKSEKKKKKKKVKDSEDKAFELPTEDADQSEKKKKHKKKKSKDAEEE 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0390 587 Coils Coil 481 517 - -
Dere11g0390 587 MobiDBLite consensus disorder prediction 17 31 - -
Dere11g0390 587 SMART DKCLD_2 45 103 IPR012960 -
Dere11g0390 587 Pfam TruB family pseudouridylate synthase (N terminal domain) 107 223 IPR002501 GO:0006396
Dere11g0390 587 Pfam DKCLD (NUC011) domain 46 103 IPR012960 -
Dere11g0390 587 MobiDBLite consensus disorder prediction 463 572 - -
Dere11g0390 587 CDD PUA_Cbf5 292 366 - -
Dere11g0390 587 Gene3D Pseudouridine synthase 79 285 - -
Dere11g0390 587 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 53 378 IPR004802 GO:0006396
Dere11g0390 587 ProSiteProfiles PUA domain profile. 293 368 - -
Dere11g0390 587 MobiDBLite consensus disorder prediction 1 33 - -
Dere11g0390 587 MobiDBLite consensus disorder prediction 433 452 - -
Dere11g0390 587 SUPERFAMILY PUA domain-like 293 374 IPR015947 -
Dere11g0390 587 CDD PseudoU_synth_hDyskerin 85 267 - -
Dere11g0390 587 Gene3D PUA domain 46 377 IPR036974 GO:0003723
Dere11g0390 587 Coils Coil 1 21 - -
Dere11g0390 587 NCBIfam uncharacterized domain 2 289 365 IPR004521 GO:0003723
Dere11g0390 587 Pfam PUA domain 294 366 IPR002478 GO:0003723
Dere11g0390 587 SUPERFAMILY Pseudouridine synthase 46 291 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Dere11g0390 587 SMART pua_5 294 368 IPR002478 GO:0003723
Dere11g0390 587 MobiDBLite consensus disorder prediction 433 587 - -
Dere11g0390 587 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 9 530 IPR004802 GO:0006396
Dere11g0390 587 FunFam H/ACA ribonucleoprotein complex subunit CBF5 79 285 - -
Dere11g0390 587 Pfam tRNA pseudouridylate synthase B C-terminal domain 224 290 IPR032819 -
Dere11g0390 587 Coils Coil 567 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0390 Dere-ChrDere11 6605550 6607313 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0390 1 501 NAC Transcription Factor Family AT3G57150 79.681 0.0 738