LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g0381	ATGGTTGAGTCAGCCTTCTCAGAGACAGCGATGGAGGAAGTAGTAATGGCTGCTTATGCGTCAGATGGGTCAGAGGAAGATGACCTTTTGAGAGAGCTTTTAGAACAATATGATGGGTCTTCTCTTTCCATTGATCAACCCAACACAAGAGCTTCAACCATTAACACCTTCCTCTCCAACATTTATTCAGGACCTACCATCTCAGATATTGAAAATGCTTTGTCATTCACCAACCACAGAGAACAATATTCCCAAGACCTCTCGCTAGCCAGAGTTTCTATACTGGAAAGAGGACTGAGCAAGATAGAGAATAAGTATACTCTGAAAATCAAATGCTTTGGGAATGGAATGGGTGATGATGGATATAAGTGGAGGAAGTATGGACAAAAATCTATTAAGAATAGCCCAAATCCAAGAAGCTACTATAGGTGCACCAACCCAAGGTGTAGTGCCAAGAAGCAGGTGGAGAGATCCAATGAGGACCCAGACACTCTTATCATCACCTACGAAGGGCTCCACCTCCATTTTGCATACCCATATCTGCTCATGACCCAGGCCCATGAATCCCTTCCCCCAACAAAGAAGCCCAAGCCCACCTCATTCCAAACTCAAGCCCAAGCCCAAGAACATGAAAGCCAACAAACACAAGAATCTGATGAAGGTCAAGGGGAAGCCCAAGAAAGCATGGGATCACAAGGATTGCTTGAAGACATGGTGCCTTTGATGATTCGGAACCCTACAATAAAGAACAGTGCTATCTCAAGCTTTTCTTGTTCCTCGTACCGTTCTAATTACAACACATCCCGGTACACTGTTGGCTTAGATTCTAGCATTTAG	837	0.4421	MVESAFSETAMEEVVMAAYASDGSEEDDLLRELLEQYDGSSLSIDQPNTRASTINTFLSNIYSGPTISDIENALSFTNHREQYSQDLSLARVSILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYLLMTQAHESLPPTKKPKPTSFQTQAQAQEHESQQTQESDEGQGEAQESMGSQGLLEDMVPLMIRNPTIKNSAISSFSCSSYRSNYNTSRYTVGLDSSI	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g0381	278	Gene3D	WRKY domain	114	171	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere11g0381	278	ProSiteProfiles	WRKY domain profile.	113	178	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere11g0381	278	FunFam	WRKY transcription factor	105	179	-	-
	Dere11g0381	278	MobiDBLite	consensus disorder prediction	195	229	-	-
	Dere11g0381	278	SMART	WRKY_cls	118	177	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere11g0381	278	SUPERFAMILY	WRKY DNA-binding domain	116	175	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere11g0381	278	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	86	216	IPR044810	GO:0003700
	Dere11g0381	278	MobiDBLite	consensus disorder prediction	189	230	-	-
	Dere11g0381	278	Pfam	WRKY DNA -binding domain	119	175	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g0381	Dere-ChrDere11	6479029	6482223	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g0381	55	255	WRKY Transcription Factor Family	AT5G43290	44.348	1.34e-52	171

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere11g0381		WRKY	5.1e-26	CL0274