Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0346 ATGGAACAAGGTCAATTTTGGATGTGGACAAAGAGGAAGTACTCTTTGAGCCCTTCGAATCTTATTGCTTCACCAACAAAACCCTCTTGTTCTTCCTATGATGATTCTTCATGGGAAGAACAAGCTTTTGCAGAAGATGCATCTGGACCTCTTGGTGGATGCATATGGCCACCTAGATCATACACTTGCAGCTTTTGCCGGAGAGAGTTCAGGTCAGCACAAGCTCTAGGAGGCCACATGAATGTTCATAGAAGGGACAGGGCAAGACTCAAACAGCCCTCTAGTCCCCAAAACAGCGAACTTCAAATTCCAAATCCTTCTCCTTTTATGGGTTTCCTATACCCATATAGTAATAGTACTGCTACTAACCCTAATTCTTATCATCCTAATTCCGTTCTTGTTTCTTCACCTTCTAGTAAGGTTTCAGCTCCATCATCAAAAATTGAGGAAACCGCGAAGATCCCAAGTTATAATTCTTCTTCTGCTATCCCCCCACATGGACATAAGCCTTCTTCTTATCCCCCTCTCTATCCTTCTTCCAAACCTAATCGGTCAAACTTAGCTGAAGCTGCTGAAGCTGAAGATGAGAAGATCACAAAGGTATTGGATTGTGGGTGTGTGCATAATGGAAAAACTGATGTGGCTTTCAGTTTAAATTTGGTCGTGTGTAGAGCCCACAGTACTCCTGTGGAGTTTCAGACAAAGGAAGAAGAAGCTATTAGTTGCAAGAAGAGGAGAATTTCAGAAGCTTCATCAATTCTTCCGTTCTTCCCAAATTCAAATTCTTCTGTTGAATTTAGCCCTAGCTCCATGGAAGAGCTAGATCTGGAGCTAAGGCTTGGTCGAGGCAGGCACAAGGTATAG 864 0.4294 MEQGQFWMWTKRKYSLSPSNLIASPTKPSCSSYDDSSWEEQAFAEDASGPLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNSELQIPNPSPFMGFLYPYSNSTATNPNSYHPNSVLVSSPSSKVSAPSSKIEETAKIPSYNSSSAIPPHGHKPSSYPPLYPSSKPNRSNLAEAAEAEDEKITKVLDCGCVHNGKTDVAFSLNLVVCRAHSTPVEFQTKEEEAISCKKRRISEASSILPFFPNSNSSVEFSPSSMEELDLELRLGRGRHKV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0346 287 PANTHER OS07G0101800 PROTEIN 32 282 - -
Dere11g0346 287 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Dere11g0346 287 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Dere11g0346 287 MobiDBLite consensus disorder prediction 78 105 - -
Dere11g0346 287 MobiDBLite consensus disorder prediction 128 166 - -
Dere11g0346 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Dere11g0346 287 Gene3D Classic Zinc Finger 58 105 - -
Dere11g0346 287 SMART c2h2final6 61 83 IPR013087 -
Dere11g0346 287 Pfam C2H2-type zinc finger 61 85 - -
Dere11g0346 287 MobiDBLite consensus disorder prediction 128 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0346 Dere-ChrDere11 5958579 5959442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0346 4 88 C2H2 Transcription Factor Family AT4G17810 56.471 2.60e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere11g0346 zf-C2H2_6 5.2e-06 CL0361