LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g0342	ATGAGCATCACCAACCACCTCGTATCTTCAATAACTATTCTTCTCCTTCGCCATCATCGTCTTCGTCTTCTTCTTCTTCATCTCTCTTTCTCGCCATTAGTCAAATCCTTTAGCCACTGCCCAGACTGTGGTCACATCCACGTGCCATTTCCACTTAGCACCGATCCACATTGTGGCTACCCATCCTACAAGGTTCGATGCGACAAAGGCACCCTCTGGTTCGACACGCTCAACAGCTCCTCTTACATGATCACCTCCATCGACCCCAAAACGCAGCGTTTCGTGGTCCGCCCTCCTGGTCTAGCCTCTCGCCACACCTGCGTGTCCTCCGATTTTGGAGCTCAAGGCATGTGGCTCGACCCCAACGCACCCTTCAACATCACCTCAAGCAACACCGTCGTACTCATGAACTGCTCCCAGGAGGTCTTAACCCTCTTGTGGAATTGCTCTTCGTCCAGCATCTGCTATAGTTATGTCAAGGGCCGAGCCGCTGAGACTTGCGGCGGCGCGATATGCTGCACCGTAAAGACTGGGGGGTCGACGACGGCTTATAGAATCAGGGTGAGGAAAGAGCGGTGCGCCGCGTACGTGAGCTTTCCTAATTTGGATGATTCGGCGCCGTTGAGTAAGTGGCCGGAGCCCGGGGTGGAGATAGAGTGGGAGTCGCCGGCGGAGCCATTGTGCATGGGGCCGGCGGATTGCGGCGGTTTGGCGAATTCGGCATGCTCGCTGGTTCCGGCGAGAGGTGGGGTGACGAAGTGCTTGTGCAACTCTGGCTTTCAGTGGGATCCCATTAACGGAATATGTCAAAAAATCAAGTGTGAACATGGAAGGGGATGCAAGCGTCGTAGTAAGAAGAAAATTCAACTTATTGGAGGCTTGGCATTTGCCGGGGCTGCCATGCTCATCGGAACCCTAATCACTGCAATGGTTTTTCACTACCGGAGGGAGTGCGCTCGGCGGAGAGAAACCCAACTAAGCATGAGCAGGGCACGTGACATATTGAACGCCGACAAGAGCGGCAAATCGGCCAAGATCTTCACCATCAAAGAGATCACAAAAGCCACCAACAACTTCTCCAAACACAACCTCCTCGGCTCCGGCGGCTTCGGCGAGGTCTTCAAGGGCACCCTCGATGACGGCACCCTCATCGCCATCAAACGCGCCAAGCTCGGCAACACTCGAGCCGCCGACCAGATCCTTAACGAGGTCCGAATCCTCTGCCAGCTCAACCACCGCTGCCTCGTACGGCTCCTAGGTTGCTGCGTCGAGCTCCACAACGAACCCCTTCTCGTCTACGAGTACATCTCCAACGGAACCCTCTTCGACCACCTCCACGACAACAATAACAAGAGAGCCCCACTCCGGTGGCACCGACGGCTGAGAATCGCTCATCAAACGGCGGAAGGGCTTTCCTATCTTCACAATTCGGCCATACCTAGAATCTTCCACAGAGACATTAAGTCGAGTAATATTCTATTGGACGATAACCTCAACGCCAAAGTTTCAGATTTTGGTCTCTCGAGGTTGGCCATAAGCGAAGCGAGTCACATCACAACGTGTGCACAGGGAACGTTGGGATATCTTGATCCAGAGTATTACATAAATTTTCAGCTTACAGATAAAAGTGATGTGTACAGTTTTGGGGTGGTTTTGTTGGAGATTTTGACGTCGAAGAAGGCTTTGGATTTTGGGAGAGAAGAGGAGGATGTGAACTTGGTGGTGTTTGTGAAGAGGGCTATGAAGAATGGTACGTTGATGGAAGTGATCGATCCAACAGTGAAGATGGGAGCTGGTAAGTTGGAGTTTGAGAGTATGAAGGCGTTGGGGTGTCTTGCAGTTGCGTGTTTAGATGATCAGAGACAGAATAGGCCGTCCATGAAAGATGTTACAGATGAGATTGAATACATTCTTGATATTATTTCTGGCGTCAAGGAAATCTGGCGGGTCACTATATATAGCAGTAACTACAGTTTGGGCGTCTGTATAAATGACTCCTGCCGCAGCAAAATTAGTGATAGCCCATCAAATCGCTTCTCGAACAACCAAAAGGCTTTAGACATTGCCCCAAAACCTGTTCTGCATTCTCCTGTGAAAGTAGCTCCGAAAGAGTGGCAAGCCCATCTATACTCCCCCTATACCAGAGTATCTGTCCTTGCAGACCATATCATTTCTGGCTCTCCACACACTCCAAGCAATCACGTTGAATCCTTCTGTTACGTTCTGTGGGCTACTGCCAAGAAGGGCCAGGACACGTTGCTGGATATCATGCAAGGGAGAAAGGTCCTTACTTCCCCAAAATTCCCAGCTTCTTTTGCTTTAGGGAAGGATGGCCTTGAACAAATGTCAGGTGAAGTTCGTGATCTTCGGTGACAGTTAAATGCTGAAGTGTGGCTGACTTGGAATATAACTTCAACTCTCCCGGCCAAATCAGACCAACAGAGAAAGAACAAAACTACTGGAACCTCTTCATCTCCTACTTTAGTTTCTCTTCTAAAACCTCTTCTTCTCTCCTCTGCCTTTTCAACTACTCCCACAGCTATACCCAAACACCTTCAACGTATTCAAATTCCACTTCTTCGGAAATCCCTCTTTGCTTCTGACGATGAAGCAATTGAACCATATGGTGAAGAAATTCGGATTGAAAACAACGATGATAAGATTACCCTGATGGGTATGGGTTTAGATTTCTGTTCCTCAAGTGAACCAGTGTTGAGCTGCCTATTGCTTCGTCCTTTGGCTCAAGCTGGAGTTTCTGCTCTTTCAATGTCGTCAGATTTGAACTACTCCCCAGATTTGAAAATTTCCAGTTACATTAGAAGGAATTATTAA	2832	0.4933	MSITNHLVSSITILLLRHHRLRLLLLHLSFSPLVKSFSHCPDCGHIHVPFPLSTDPHCGYPSYKVRCDKGTLWFDTLNSSSYMITSIDPKTQRFVVRPPGLASRHTCVSSDFGAQGMWLDPNAPFNITSSNTVVLMNCSQEVLTLLWNCSSSSICYSYVKGRAAETCGGAICCTVKTGGSTTAYRIRVRKERCAAYVSFPNLDDSAPLSKWPEPGVEIEWESPAEPLCMGPADCGGLANSACSLVPARGGVTKCLCNSGFQWDPINGICQKIKCEHGRGCKRRSKKKIQLIGGLAFAGAAMLIGTLITAMVFHYRRECARRRETQLSMSRARDILNADKSGKSAKIFTIKEITKATNNFSKHNLLGSGGFGEVFKGTLDDGTLIAIKRAKLGNTRAADQILNEVRILCQLNHRCLVRLLGCCVELHNEPLLVYEYISNGTLFDHLHDNNNKRAPLRWHRRLRIAHQTAEGLSYLHNSAIPRIFHRDIKSSNILLDDNLNAKVSDFGLSRLAISEASHITTCAQGTLGYLDPEYYINFQLTDKSDVYSFGVVLLEILTSKKALDFGREEEDVNLVVFVKRAMKNGTLMEVIDPTVKMGAGKLEFESMKALGCLAVACLDDQRQNRPSMKDVTDEIEYILDIISGVKEIWRVTIYSSNYSLGVCINDSCRSKISDSPSNRFSNNQKALDIAPKPVLHSPVKVAPKEWQAHLYSPYTRVSVLADHIISGSPHTPSNHVESFCYVLWATAKKGQDTLLDIMQGRKVLTSPKFPASFALGKDGLEQMSGEVRDLRXQLNAEVWLTWNITSTLPAKSDQQRKNKTTGTSSSPTLVSLLKPLLLSSAFSTTPTAIPKHLQRIQIPLLRKSLFASDDEAIEPYGEEIRIENNDDKITLMGMGLDFCSSSEPVLSCLLLRPLAQAGVSALSMSSDLNYSPDLKISSYIRRNY	943

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g0342	943	Pfam	Protein tyrosine and serine/threonine kinase	362	633	IPR001245	GO:0004672\|GO:0006468
	Dere11g0342	943	Gene3D	Phosphorylase Kinase; domain 1	332	435	-	-
	Dere11g0342	943	CDD	STKc_IRAK	365	635	-	-
	Dere11g0342	943	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	33	676	IPR044652	GO:0004672
	Dere11g0342	943	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	334	435	-	-
	Dere11g0342	943	SMART	serkin_6	359	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g0342	943	ProSitePatterns	Protein kinases ATP-binding region signature.	365	387	IPR017441	GO:0005524
	Dere11g0342	943	SUPERFAMILY	Protein kinase-like (PK-like)	343	639	IPR011009	-
	Dere11g0342	943	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	482	494	IPR008271	GO:0004672\|GO:0006468
	Dere11g0342	943	FunFam	Wall-associated receptor kinase-like 20	436	646	-	-
	Dere11g0342	943	Pfam	Wall-associated receptor kinase galacturonan-binding	40	96	IPR025287	GO:0030247
	Dere11g0342	943	ProSiteProfiles	Protein kinase domain profile.	359	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g0342	943	Gene3D	Transferase(Phosphotransferase) domain 1	436	640	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g0342	Dere-ChrDere11	5870841	5880757	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g0342	27	642	Receptor kinase-like Gene Family	AT5G02070	53.662	0.0	668

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Dere11g0342		PK_Tyr_Ser-Thr	2.2e-45	CL0016