Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0309 ATGGCTGTAAATGAAGATTCTATACGAGAATATGTACCTCCAAAGGAAAAGCCACCTTCCGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCTGGGAGTTTGATGAAAGCTCTAATGAGGCCTGGAGGGGGTGACTCAACACCTTCAGATGGTGATCAGATAATATATCATTGTACAATTCGAAGTTTGGATGGAGTAGTTGTGCATTCTACCAGATCAGATTGTGGAGGGAAGGGAATCCCAACCAGACATGTCTTGGGGAAAAGCAAGATGCTATTGGGCTTGTTAGAAGGGATTCCAACAATGTTGAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGCGAGGATGATTGTCCTATTTCTGCTCCTGATGGTTTTCCAAAGGAAGATGAACTTCATTTTGAAATTGAGCTGATAGATTTTTTCAAAACCAAGGTTGTTACTGATGACTTGGGTGTTATAAAAAAGGTGATACGTGAAGGACAGGGTTGGGAATCCCCACGTGAACCTTATGAAGTGAAAGCTTGGATTTCCGCAAAGACAGTTGCTGGGAAGTTGATTGTCTCACACACTGAAGGAGAACCTTATTTCTTTACATTTGGAAAATCAGAGGTACCCAAAGGTCTTGAAATGGGTATAGGGACAATGTCAAGGGAAGAGAAGGCTGTAATATTTGTTACTAGTCCGTATCTAACTCAGTCTCCTCTGATGCCACTGATAGAAGATTATGAAGAAGTCCAGTTTGAAGTGGAGCTTGTCCACTTTATTCAAGTTAGGGACATGCTTGGAGATGGGCGCTTAATAAAACGCCGAATTCGTGATGGGACAGGTGAATTTCCAATGGATTGCCCTCTTCATGACAGTCTACTTCGCGTGCACTACAAGGGTATGGTTCTTAACAAAGAAAACAGGGTATTCTATGACACAAGAGTTGATAATGATGGTCAGCCACTGGAGTTCTGTTCTGGAGAAGGGCTTGTGCCAGAGGGGTTTGAAATGTGTGTTCGTCTGATGCTTCCTGGAGAGGTAGCTCTTGTCACCTGTCCTCCGGACTATGCTTATGACAAGTTTCCAAGGCCAGCAAATATTCCTGAGGGTGCTGATATTCAATGGGAAATTGAGCTTCTTGGTTTTGAAATGCCAAAGGACTGGACTGGATTGGACTTTGAAAGTATAATGGATGATGCTGAGAAGATCAGAAACACGGGTAACAGGCTGTTCAAAGAAGGAAAATATGAACTTGCCAAAGCAAAATATGAGAAGGTGCTTAGAGAATTTAATCATGTCAATCCACAAGATGATGAGGAAGGAAAAGTATTTTCAGATACACGTAATTTGTTACATCTGAATGTTGCTGCATGCTATCTGAAATTGGGAGAACTGAGAAAGTCCATTGAGTTTTGCAATAAGGTTTTGGATGCAAACCCTGCCCATGTCAAGGGTCTTTACCGTCGCGGAATGGCCTACATGGCAGCTGGAGATTTTGAAGAAGCAACGAGTGATTTCAACATGATGATGAAAGTTGACAAGTCAACTGAACCAGATGCAACTGCAGCTCTTCTTAAACTGAAGCAGAAGGAGCAGGAAGTTGAGAGGAAGGCTCGAAAGCAATTTAAAGGCCTCTTTGACAAGAAGCCAGGAGAAATTGCAGAGGTCAAAGCTGATGAGGATAAAGATCAGAAGACAAGTGAAAGCAAGGAGGATGATGAAGGACATGGAGTTTCAGATGGAACAAGCTCAGAGGATTCACATGAAGCTGCACCTGATGCCCCTCAAATGGGGTGGTTCTCTCGCTTTTGGCCTAGCAGATTATTATCATCTCTTCGGCTTCAAAGATGTACCATTCTATGA 1866 0.4277 MAVNEDSIREYVPPKEKPPSEDEKRKKKIVPGSLMKALMRPGGGDSTPSDGDQIIYHCTIRSLDGVVVHSTRSDCGGKGIPTRHVLGKSKMLLGLLEGIPTMLKGEVAMFKMKPQLHYGEDDCPISAPDGFPKEDELHFEIELIDFFKTKVVTDDLGVIKKVIREGQGWESPREPYEVKAWISAKTVAGKLIVSHTEGEPYFFTFGKSEVPKGLEMGIGTMSREEKAVIFVTSPYLTQSPLMPLIEDYEEVQFEVELVHFIQVRDMLGDGRLIKRRIRDGTGEFPMDCPLHDSLLRVHYKGMVLNKENRVFYDTRVDNDGQPLEFCSGEGLVPEGFEMCVRLMLPGEVALVTCPPDYAYDKFPRPANIPEGADIQWEIELLGFEMPKDWTGLDFESIMDDAEKIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKVFSDTRNLLHLNVAACYLKLGELRKSIEFCNKVLDANPAHVKGLYRRGMAYMAAGDFEEATSDFNMMMKVDKSTEPDATAALLKLKQKEQEVERKARKQFKGLFDKKPGEIAEVKADEDKDQKTSESKEDDEGHGVSDGTSSEDSHEAAPDAPQMGWFSRFWPSRLLSSLRLQRCTIL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0309 621 Gene3D - 4 149 IPR046357 GO:0003755
Dere11g0309 621 SUPERFAMILY TPR-like 398 538 IPR011990 GO:0005515
Dere11g0309 621 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515
Dere11g0309 621 SUPERFAMILY FKBP-like 150 260 - -
Dere11g0309 621 MobiDBLite consensus disorder prediction 554 599 - -
Dere11g0309 621 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 384 IPR001179 GO:0003755
Dere11g0309 621 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 45 144 IPR001179 GO:0003755
Dere11g0309 621 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 176 258 IPR001179 GO:0003755
Dere11g0309 621 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 293 381 IPR001179 GO:0003755
Dere11g0309 621 ProSiteProfiles TPR repeat profile. 450 483 IPR019734 GO:0005515
Dere11g0309 621 PANTHER INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 150 262 - -
Dere11g0309 621 Gene3D Tetratricopeptide repeat domain 394 549 IPR011990 GO:0005515
Dere11g0309 621 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 194 261 IPR001179 GO:0003755
Dere11g0309 621 FunFam Peptidylprolyl isomerase 8 150 - -
Dere11g0309 621 Gene3D - 150 261 IPR046357 GO:0003755
Dere11g0309 621 MobiDBLite consensus disorder prediction 9 30 - -
Dere11g0309 621 FunFam Peptidylprolyl isomerase 389 545 - -
Dere11g0309 621 Pfam Tetratricopeptide repeat 454 483 IPR019734 GO:0005515
Dere11g0309 621 FunFam Peptidylprolyl isomerase 151 261 - -
Dere11g0309 621 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 51 147 IPR001179 GO:0003755
Dere11g0309 621 Coils Coil 521 541 - -
Dere11g0309 621 FunFam Peptidylprolyl isomerase 262 386 - -
Dere11g0309 621 SUPERFAMILY FKBP-like 4 150 - -
Dere11g0309 621 Gene3D - 262 383 IPR046357 GO:0003755
Dere11g0309 621 MobiDBLite consensus disorder prediction 1 30 - -
Dere11g0309 621 MobiDBLite consensus disorder prediction 554 588 - -
Dere11g0309 621 SUPERFAMILY FKBP-like 266 389 - -
Dere11g0309 621 SMART tpr_5 484 517 IPR019734 GO:0005515
Dere11g0309 621 SMART tpr_5 401 434 IPR019734 GO:0005515
Dere11g0309 621 SMART tpr_5 450 483 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0309 Dere-ChrDere11 5419165 5428026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0309 29 549 Calmodulin-binding Proteins AT5G48570 30.899 2.07e-62 215