Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0300 ATGTTTACACTTTCCATTAGGTATGGTGATCTCAATTCCTACCAAAAAGGGAATAGGGCCTCATTTAGAGCTGTCAAAGGGTACAGTCCCGCAGTCAAAGACAACCGTGTGATGGATGAAGAAGACACTACAGTCGTCGCCGGAGCACCCGACGGAGACGGTGATACCGCTGACGTCGGAAGTGGCGAAGAGCGGCTATCGGGCTCTGGCGAAGCGCGTGGAAGTAGCTCGCGCGGGGCCAGAGACAGGGTGAAAGGACCTTGGTCTCCAGAAGAGGACGCCATTCTGAGTCGGCTCGTAAGCAAGTTCGGCGCGAGAAATTGGAGCTTAATTGCCCGTGGGATCGCGGGACGATCTGGCAAATCGTGCCGGCTCCGGTGGTGTAATCAGCTGGATCCAGCTGTGAAGCGCAAGCCTTTTACTGTTTTGAAGTTTGAGGACGAAATTGTTTTGAACGTTGGACCTAAATTGTCCTTTGTTCAACTTCAGCTTGTGACCCTAAGCTATTGGCAGAAAGAAAGGCTAATCAAAGTACACTTCTTCTCAGATGAGGAGGACCAAATTATAGTTTCAGCGCATGCAATCCATGGGAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAAAACCACTGGAATTCCACCTTGAGGCGTCGAGGAGTGGAACATGATAAGATTAAGTTAGAATCTAGCACAGAAGAAACTCCATCATGTGGAGATGTTAATTCCTTGAGATCCTCAGAAGTAAGAGATGCCTGTGCTATAGAGACTTTAAATGATAGATGTGACGACAAAGCAGAGACAGAGGATCAAATAAACCATGAATTGAAGGATCCACCTACCCTTTTCCGACCACTGGCACGTCACAGTGCTTTCAATGTATATAGTTCTTGGGATGGTTCGCAACCTTCAACATCAACTCAAAGGCCTCCTCCAATGCAAGGGCCCCTTTTTCAGGCATCAAATCCTGATATTGGAATTAGTAGAATGCTCGATGGAATTTATGGGGACCGGTCAGTGCCTCACTGGTGTGGACATGGCTGCTGTGCTGCCCAAAATAGTATAAAAAATGATACCTCCTTGCTGGGGCCAGAATTCATTGAATTTTCAGAACCTCCATCTTTCCCAAGTTTTGAGTTGGCTGCAATAGCTACAGATATAAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAAAATAGTAGTGTCAAAATGATGGGGGAACCGGCTGGAAGGACCAAGACGAAATCACTCTCTGAGCTGCAACAGGAGCTTTGTCTACATGTTGCTCTTGACAGAATCCAATGCCCCGAGAAACTCTCAAAAATTTTTGAACTTTTGGGTTTGAGGAATCCAGTTTAG 1380 0.4667 MFTLSIRYGDLNSYQKGNRASFRAVKGYSPAVKDNRVMDEEDTTVVAGAPDGDGDTADVGSGEERLSGSGEARGSSSRGARDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTVLKFEDEIVLNVGPKLSFVQLQLVTLSYWQKERLIKVHFFSDEEDQIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVEHDKIKLESSTEETPSCGDVNSLRSSEVRDACAIETLNDRCDDKAETEDQINHELKDPPTLFRPLARHSAFNVYSSWDGSQPSTSTQRPPPMQGPLFQASNPDIGISRMLDGIYGDRSVPHWCGHGCCAAQNSIKNDTSLLGPEFIEFSEPPSFPSFELAAIATDISNLAWLKSGLENSSVKMMGEPAGRTKTKSLSELQQELCLHVALDRIQCPEKLSKIFELLGLRNPV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0300 459 Gene3D - 84 136 - -
Dere11g0300 459 SMART sant 84 133 IPR001005 -
Dere11g0300 459 SMART sant 177 225 IPR001005 -
Dere11g0300 459 Pfam Myb-like DNA-binding domain 181 222 IPR001005 -
Dere11g0300 459 Pfam Myb-like DNA-binding domain 85 131 IPR001005 -
Dere11g0300 459 SUPERFAMILY Homeodomain-like 82 219 IPR009057 -
Dere11g0300 459 FunFam MYB transcription factor 85 136 - -
Dere11g0300 459 ProSiteProfiles Myb-like domain profile. 80 131 IPR001005 -
Dere11g0300 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 135 IPR017930 -
Dere11g0300 459 CDD SANT 181 223 IPR001005 -
Dere11g0300 459 FunFam Transcription factor MYB44 180 226 - -
Dere11g0300 459 Gene3D - 180 245 - -
Dere11g0300 459 MobiDBLite consensus disorder prediction 304 327 - -
Dere11g0300 459 PANTHER MYB PROTEIN-RELATED 85 279 - -
Dere11g0300 459 MobiDBLite consensus disorder prediction 304 322 - -
Dere11g0300 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 227 IPR017930 -
Dere11g0300 459 MobiDBLite consensus disorder prediction 44 88 - -
Dere11g0300 459 ProSiteProfiles Myb-like domain profile. 181 223 IPR001005 -
Dere11g0300 459 CDD SANT 87 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0300 Dere-ChrDere11 5340205 5345334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0300 74 420 MYB Transcription Factor Family AT3G09230 44.744 1.99e-93 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere11g0300 Myb_DNA-binding 3.5e-14 CL0123