Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere11g0275 | ATGCTTCAGATTCGGCTTAGCAAGGCTCCTGCCTCAGAAGGTTTAGCAGGGGTGAAGCCCTCACCAGTTGAGACTGTTACAGTTACATGTCCTGATCATCTAGTCCTTGCTGATCTTCCAGTAGCAAAGGGCATTGGTTCAGCAACTACTGCTTCACTTGTTAAGACTTTGGGCCGTAGATCCCGCCGCCAGTGTGGTGACTGTGTCCACTTCTGCGTTCGTTGTGATTTTCCAATTGCAATATATGGGCGACTGAGCCCTTGTGAGCATGCCTTCTGTCTGGATTGTGCTAGAAGTGATTCATTATGCTACCTGTGCGATGAACGAATCCAGAAAATTCAGACAATCAAAATGATGGAGGGAATCTTCATTTGTGCAGCTCCTCACTGTTTCAAGTCTTTCTTGAAGATTTCGGAATTTGAAATGCATATCCATGATGTGCATGCTGACCTTCTCCGGTCCAATGTAGATAAAGAAGATGGGATTGAGTCAGAGGCCCATAGTGTTCGGCAATTTACAGCATCAGAATCCTCTGCTCGAGCTCCCCAACGACCTGTTTTCTCTCCTGGTTCAAATTCCCAGCTACATGATCGGGATGACAAGCCTCGTCAACAACCACCAAGAGATCAACCACCTCCGAGGCCAACATCACAGCCAATGCCATCATTTTTTGGTCAAGTTCAAAATAACCCTGCAGATCTCCAGTCTGGCTCTGCTGGAGGTAATCAACAGGGCTTCTATCAACAAAGTCCTGACATGCAGCGACCTCCGCAAGAACTTTACCAGTTTGCAGATAGACACCAAGGAATTACACCAGAGACACCATTTCCTGAATATCCATCCATGCATTCCACCCAGCCGCCCAATTTTGCCATGCCAGCTAATGCAAACCCAATGTTAAATCCTCCTGTGTCATTTGGTTATCCTCCTTACCCACCACAGGAGGGAGCTCCACCATTTTTCGTCCCTCCGTATGATATGTGTAGACAAGACTCAGCTTCTGAAATAGGTGCAGACCCGAGTTCATTGCTGGGTTTTCCACCAGGTGCTGCAAGTGGCCCTAATTTTCCAGCTAATTATCCCCAGCCCTTGAATGCAGGAACTAGTGGTCTGCCTTTTGAACAAGCACAGAGTGGTATGTCTATGGATCCAAGGGATGCCAAAGGTGTGGCACCACAGTCCATGCCCCTCCCACTGCCACCTCCTCACCCACCGCACATGTCCCATCTGAATCAGAAATATTATTCCGGTGAGTTTGGACGCAATGGGCATGGTTATAGTTGGCAGCATGATAATCGTGACACCTTTGATGGTCAGGACTAG | 1323 | 0.4792 | MLQIRLSKAPASEGLAGVKPSPVETVTVTCPDHLVLADLPVAKGIGSATTASLVKTLGRRSRRQCGDCVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKMMEGIFICAAPHCFKSFLKISEFEMHIHDVHADLLRSNVDKEDGIESEAHSVRQFTASESSARAPQRPVFSPGSNSQLHDRDDKPRQQPPRDQPPPRPTSQPMPSFFGQVQNNPADLQSGSAGGNQQGFYQQSPDMQRPPQELYQFADRHQGITPETPFPEYPSMHSTQPPNFAMPANANPMLNPPVSFGYPPYPPQEGAPPFFVPPYDMCRQDSASEIGADPSSLLGFPPGAASGPNFPANYPQPLNAGTSGLPFEQAQSGMSMDPRDAKGVAPQSMPLPLPPPHPPHMSHLNQKYYSGEFGRNGHGYSWQHDNRDTFDGQD | 440 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere11g0275 | 440 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 123 | IPR013083 | - | |
| Dere11g0275 | 440 | CDD | RING-HC_HAKAI-like | 70 | 119 | IPR040380 | - | |
| Dere11g0275 | 440 | MobiDBLite | consensus disorder prediction | 169 | 193 | - | - | |
| Dere11g0275 | 440 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 125 | 148 | IPR013087 | - | |
| Dere11g0275 | 440 | MobiDBLite | consensus disorder prediction | 278 | 292 | - | - | |
| Dere11g0275 | 440 | MobiDBLite | consensus disorder prediction | 269 | 296 | - | - | |
| Dere11g0275 | 440 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED | 1 | 414 | IPR040383 | GO:0016567|GO:0061630 | |
| Dere11g0275 | 440 | MobiDBLite | consensus disorder prediction | 220 | 254 | - | - | |
| Dere11g0275 | 440 | MobiDBLite | consensus disorder prediction | 365 | 440 | - | - | |
| Dere11g0275 | 440 | MobiDBLite | consensus disorder prediction | 169 | 254 | - | - | |
| Dere11g0275 | 440 | FunFam | E3 ubiquitin-protein ligase Hakai | 69 | 123 | - | - | |
| Dere11g0275 | 440 | ProSitePatterns | Zinc finger RING-type signature. | 88 | 97 | IPR017907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere11g0275 | Dere-ChrDere11 | 5058403 | 5061378 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere11g0275 | 1 | 440 | C2H2 Transcription Factor Family | AT5G01160 | 45.516 | 1.16e-106 | 318 |