Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere11g0269 | ATGGACTTGAATGCATCACCGGTGCCTGAGGAAGATGACGATACTTTTGAAAGACATATAGAAGAGTATACCCAACCAGAAGAGCGCGTAGAGTCTGCAGTTGATATAGCACGTCGGGAGCGTGAAGAAAGGAAAAGGCGATTGAAAAGAGAACGTACAGATGATAGACCTATGCATGTATCACAGTCAACTGGTTATGATCAGACTTTTCATACAAAGACCCTTAAGTCATATGATAAAAGTAGGCTTCCTCCAGGGTGGTTGGATTGCCCCTCATTTGGTCAGGAAATATATTGCATGATACCTTCCAAGGTTCCACTTGGTGAATCGTTCAATGATTGCATTGCCCCTGGTAGAAGATACTCATTTAAACAAGTGATACATCAACAAAGAGTTTTAGGGAGAAAACTTGGTTTGGTGATTGATTTGACAAATACTACACGTTACTATCCAGTGTCAGATTTAAAGAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAAGGGGCGCGATTCTGTACCTGATAATTTATCAGTGAATCAATTTGTCCATGAGGTTACCCAATTTCTATCACGTCAAAAACAAGCGAAGAAGTATATACTTGTTCATTGTACACATGGACATAATCGTACTGGATACATGATTGTACATTATCTTATGCGCTCTATGTCAATGTCTGTCACCCAGGCAATTAAAATATTTTCTGAAGCACGCCCCCCAGGAATTTACAAACCTGATTACATTGATGCTTTGTACACATTTTATCATGAGAAAAAACCTGAAATGGTGGTTTGTCCCCCTACACCAGAGTGGAAGAGATCATCTGAATTTGATCTCAATGGTGAAGCAGTGCCAGATGATGATGATGATGGAGGACCAGGCCCTCCTTTACATGAGAACCTTGAGACAGATGTAATCATGACAAATGATGATGTTTTGGGAGATGAGATACCTATTGATCAACAAGATGGATTTCGACAGTTTTGTTATCAATCACTTAAATTGAATCTTGGGGCCAGAGGGCACACACAATTTCCAGGGTCACACCCAGTTTCTCTTAATAGGGAGAATTTACAATTGTTACGACAGCGTTATTATTATGCAACGTGGAAAGCAGATGGAACGAGATATATGATGCTAATAACTATGGATGGATGTTACTTGATTGATAGAAGTTTCAATTTTCGTAGGGTACAAATGAGGTTTCCTTGCAGGGGTTCAAATGATGGTTTGGCTGAGAAGACCCACCACTACACATTACTTGATGGGGAGATGATTATTGATACATTGCCAGATTCACGTAAGCAGGAAAGGAGATACCTTATATATGATATGATAGCAATTAACCACGTATCTATAATAGAGCGACCATTCTATGAACGGTGGAAGATGCTTGAGAAAGAGGTGATTGAACCTAGGAATCAGGAACGGCATAATACATACCAGAGCAGAAATCCTTATTATAGATATGACCTGGAACCGTTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAAGAATTTGTTAAGAAGCTCTCGCATGATGCAGATGGCCTCATATTTCAGGGTTGGGATGATCCTTATGTACCACGCACTCATGAAGGCCTTCTGAAGTGGAAGTATCCTGAGATGAATTCTGTTGATTTTCTGTTTGAGATTGATGATGATCGCCAGTTACTTTTTCTTTATGAACGAGGAAAGAAGAAGCTCATGGAAGGGAATAGGGTTGCATTCAGAGATGGTTCAGATCCCTTGCTTTATTCAGGAAAAATTATAGAATGTTCTTGGGATTCTGATGAGCAGGAATGGGTATGCATGCGAATGAGGACCGATAAGTCAACTCCCAATGATTTTAATACTTACAAGAAGGTTATGCGGAGTATAAAAGACAACATCACAGAGGATGTCTTGTTGAATGAAATTTATGAGATAATTCGCCTTCCCATGTATGCTGACAGGATAAAAATTGATAGCAAAGCCCATCACCATACTGGTGCAGCACGCAGAAGGTGA | 2034 | 0.3992 | MDLNASPVPEEDDDTFERHIEEYTQPEERVESAVDIARREREERKRRLKRERTDDRPMHVSQSTGYDQTFHTKTLKSYDKSRLPPGWLDCPSFGQEIYCMIPSKVPLGESFNDCIAPGRRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYPVSDLKKEGIKHVKIQCKGRDSVPDNLSVNQFVHEVTQFLSRQKQAKKYILVHCTHGHNRTGYMIVHYLMRSMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGGPGPPLHENLETDVIMTNDDVLGDEIPIDQQDGFRQFCYQSLKLNLGARGHTQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRGSNDGLAEKTHHYTLLDGEMIIDTLPDSRKQERRYLIYDMIAINHVSIIERPFYERWKMLEKEVIEPRNQERHNTYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFVKKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEIDDDRQLLFLYERGKKKLMEGNRVAFRDGSDPLLYSGKIIECSWDSDEQEWVCMRMRTDKSTPNDFNTYKKVMRSIKDNITEDVLLNEIYEIIRLPMYADRIKIDSKAHHHTGAARRR | 677 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere11g0269 | 677 | PANTHER | MRNA-CAPPING ENZYME | 78 | 659 | - | - | |
| Dere11g0269 | 677 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 202 | 212 | IPR016130 | GO:0016311|GO:0016791 | |
| Dere11g0269 | 677 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
| Dere11g0269 | 677 | Pfam | Dual specificity phosphatase, catalytic domain | 135 | 255 | IPR000340 | GO:0008138|GO:0016311 | |
| Dere11g0269 | 677 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 83 | 272 | IPR029021 | - | |
| Dere11g0269 | 677 | CDD | Adenylation_mRNA_capping | 337 | 548 | IPR001339 | GO:0004484|GO:0005524|GO:0006370 | |
| Dere11g0269 | 677 | Pfam | mRNA capping enzyme, catalytic domain | 349 | 547 | IPR001339 | GO:0004484|GO:0005524|GO:0006370 | |
| Dere11g0269 | 677 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 110 | 261 | IPR020422 | GO:0006470|GO:0008138 | |
| Dere11g0269 | 677 | Gene3D | - | 548 | 639 | IPR012340 | - | |
| Dere11g0269 | 677 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 440 | 575 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
| Dere11g0269 | 677 | MobiDBLite | consensus disorder prediction | 279 | 300 | - | - | |
| Dere11g0269 | 677 | Gene3D | DNA ligase/mRNA capping enzyme | 308 | 547 | - | - | |
| Dere11g0269 | 677 | Coils | Coil | 34 | 54 | - | - | |
| Dere11g0269 | 677 | CDD | RNA_5'-triphosphatase | 86 | 252 | - | - | |
| Dere11g0269 | 677 | Gene3D | Protein tyrosine phosphatase superfamily | 58 | 278 | IPR029021 | - | |
| Dere11g0269 | 677 | SMART | dsp_5 | 117 | 257 | IPR020422 | GO:0006470|GO:0008138 | |
| Dere11g0269 | 677 | SUPERFAMILY | Nucleic acid-binding proteins | 550 | 661 | IPR012340 | - | |
| Dere11g0269 | 677 | MobiDBLite | consensus disorder prediction | 11 | 58 | - | - | |
| Dere11g0269 | 677 | FunFam | mRNA capping enzyme, putative | 308 | 545 | - | - | |
| Dere11g0269 | 677 | FunFam | mRNA capping enzyme family protein | 79 | 293 | - | - | |
| Dere11g0269 | 677 | PIRSF | mRNA_capping_HCE | 69 | 677 | IPR017074 | GO:0004484|GO:0006370|GO:0140818 | |
| Dere11g0269 | 677 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 180 | 249 | IPR000387 | GO:0016311|GO:0016791 | |
| Dere11g0269 | 677 | Pfam | mRNA capping enzyme, C-terminal domain | 552 | 645 | IPR013846 | - | |
| Dere11g0269 | 677 | FunFam | mRNA capping enzyme family protein | 546 | 654 | - | - | |
| Dere11g0269 | 677 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 310 | 548 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere11g0269 | Dere-ChrDere11 | 4994800 | 5006647 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere11g0269 | 1 | 677 | Protein tyrosine phosphatase (PTP) family | AT3G09100 | 71.596 | 0.0 | 981 |