LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g0195	ATGTTTCTATCTCGAATGAGTCATCGAGGGTTTTGTGACCTTCCTATGTACGAAAGGAAAAATCGTAGCATTCTAACGTTGTCACGCTCGGAGCATTTGAACATTCAAGATACAATTTCAGATAGAGGGTTTATTAGTGGTTTTGTTGGAGATGAGAAGAGAGCGATGATTGGACATTGCTTCGGTGCCTTGAATTGGTGTAAGAGGAGGAAGTATCCTGCTGATCAGTCACATGAACGAGTGATATCAACTAGAAAATTTAGCTATAAATCTTTGAGATCAGCAACAGGAGACTTTCATCCATCAAACAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTACGGGATGGAACTCAAGTTGCTGTCAAGTCCCTTTCTGTAGAGTCTAAACAAGGAACAGAAGAATTTCTGACAGAAATTGATATGATATCAAATATACGACATCCAAACCTTATACAACTAGTTGGCTGCTGTGTTGAGGGCGACCATCGGATATTGGTGTACGAATTTCTGGAGAACAATAGCCTTGCAAGTTCTTTGCTTAGTTCCAGAAGTAAATATGTTGCTCTGGATTGGCCAAATAGGGCTGCTATTTGCCTTGGTACAGCATCTGGTCTTGCATTTCTTCATGAAGAAGCTCAACCAAACATTGTTCATAGAGATATCAAGGCTAGCAACATACTGCTTGATAAGAACTTAAATCCTAAAATAGGGGACTTCGGCCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTCAGTACTCGAGTGGCAGGAACTGTAGGATATCTTGCTCCAGAATATGCACGTTTAGGACAGCTTACAAAAAAGGCGGATGTATACAGTTTTGGTATTCTCATGCTTGAAGTAATCAGTGGTAAAAGTAGCAGCAAAGCTGCATTTGGAGATAACCTATTGGTTCTGGTGGAATGGACTTGGAAGCTGAAAGAAGAAAATAGGCTTCTCGACATTGTTGATCCTGAACTAGCTTCATATGATGAGATTGAGGTTTTGCGTTTCATTAAGGTTGCTCTGTTATGTACCCAAGCAGCTGCTCATCACAGACCAACCATGAAGCAGGTAGTGGAAATGCTTTCCAAGGAAGTTCACCTTAATGACAAGGCTTTGACTGAGCCTGGAGTTCGTAGGTGGCAACATGCCTCCAGAAAGGTGGCAAGTTCTTTGGACGAGATTTTACCTTCTCAAGTGAACAAGCAGAAAAGACCTGAAAATTCAAATGTGACCTCAGACTACTGTAGTGGTTTTGATATTGTGACAGAGATGCTTCCGAGATGA	1308	0.4128	MFLSRMSHRGFCDLPMYERKNRSILTLSRSEHLNIQDTISDRGFISGFVGDEKRAMIGHCFGALNWCKRRKYPADQSHERVISTRKFSYKSLRSATGDFHPSNKIGGGGYGVVYKGVLRDGTQVAVKSLSVESKQGTEEFLTEIDMISNIRHPNLIQLVGCCVEGDHRILVYEFLENNSLASSLLSSRSKYVALDWPNRAAICLGTASGLAFLHEEAQPNIVHRDIKASNILLDKNLNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYARLGQLTKKADVYSFGILMLEVISGKSSSKAAFGDNLLVLVEWTWKLKEENRLLDIVDPELASYDEIEVLRFIKVALLCTQAAAHHRPTMKQVVEMLSKEVHLNDKALTEPGVRRWQHASRKVASSLDEILPSQVNKQKRPENSNVTSDYCSGFDIVTEMLPR	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g0195	435	CDD	STKc_IRAK	118	371	-	-
	Dere11g0195	435	ProSitePatterns	Protein kinases ATP-binding region signature.	105	127	IPR017441	GO:0005524
	Dere11g0195	435	SMART	serkin_6	99	369	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g0195	435	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	83	397	-	-
	Dere11g0195	435	Gene3D	Transferase(Phosphotransferase) domain 1	175	385	-	-
	Dere11g0195	435	ProSiteProfiles	Protein kinase domain profile.	99	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g0195	435	FunFam	cold-responsive protein kinase 1	70	174	-	-
	Dere11g0195	435	Gene3D	Phosphorylase Kinase; domain 1	64	174	-	-
	Dere11g0195	435	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	221	233	IPR008271	GO:0004672\|GO:0006468
	Dere11g0195	435	SUPERFAMILY	Protein kinase-like (PK-like)	75	369	IPR011009	-
	Dere11g0195	435	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	175	381	-	-
	Dere11g0195	435	Pfam	Protein kinase domain	100	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g0195	Dere-ChrDere11	3158729	3162777	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g0195	68	384	Receptor kinase-like Gene Family	AT1G56120	52.648	7.91e-107	334

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dere11g0195		Pkinase	3.7e-47	CL0016