Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0193 ATGAAACTGAGGGGGAAAAGATGGAGGGTAAAAGAGATTCGGGTTTTAGTTTTCTTCATCTTTCGCCGCCTTCAAGGTCAAGGTCTTCGGCAAGTTTTCTCTCTCGCTGTCCTCTCTCCTTCGCTATCTGGAAGCTTTATATGGAATTTTACAAAGAAATTTATCACATTTGGGCTCGTTACTGTGACAGTGTCAGATCGCTATGTGACTGTTGTTCCAGTTCGTGGTGGCTCTATGTCTCCCACATTTAATCCCAAAACCAATTCTTTAATGGGAAATATTTCTGATGACTATGTCTTGGTTGAGAAATTTTGCCTTGGAAACTATAAGTTTTCCCGTGGAGATGTGGTGGTCTTCCGCTCCCCATTGAATCACAAGGAGACACACACAAAGAGAATAGTCGCATTACCTGGAGAGTGGTTTGGCGCACATCGTAACTATGACGTGCTGAAGATTCCAGAAGGACATTGTTGGGTTGAGGGAGACAATGCAGGTTCTAGCATGGATTCAAACTCATTTGGTCCTATTCCTTTGGGTCTAGTTCGAGGAAGGGTGACCCACATTGTATGGCCTCCACAAAGAATAGGTGCAGTAAAGAAGTCTCCACCTGAAGGATTATCTTCTTAA 627 0.4354 MKLRGKRWRVKEIRVLVFFIFRRLQGQGLRQVFSLAVLSPSLSGSFIWNFTKKFITFGLVTVTVSDRYVTVVPVRGGSMSPTFNPKTNSLMGNISDDYVLVEKFCLGNYKFSRGDVVVFRSPLNHKETHTKRIVALPGEWFGAHRNYDVLKIPEGHCWVEGDNAGSSMDSNSFGPIPLGLVRGRVTHIVWPPQRIGAVKKSPPEGLSS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0193 208 PRINTS Bacterial leader peptidase 1 (S26A) family signature 152 171 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere11g0193 208 PRINTS Bacterial leader peptidase 1 (S26A) family signature 67 83 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere11g0193 208 PRINTS Bacterial leader peptidase 1 (S26A) family signature 129 141 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere11g0193 208 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 45 203 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Dere11g0193 208 CDD S26_SPase_I 71 185 IPR019533 GO:0004252|GO:0006465
Dere11g0193 208 Gene3D Umud Fragment, subunit A 66 201 - -
Dere11g0193 208 SUPERFAMILY LexA/Signal peptidase 69 198 IPR036286 -
Dere11g0193 208 Pfam Signal peptidase, peptidase S26 49 139 IPR019533 GO:0004252|GO:0006465
Dere11g0193 208 Pfam Signal peptidase, peptidase S26 149 190 IPR019533 GO:0004252|GO:0006465
Dere11g0193 208 FunFam Mitochondrial inner membrane protease subunit 65 203 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0193 79 202 MADS-box Gene Family AT1G29960 36.923 2.03e-19 78.6