Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0191 ATGAATTGCAGAAATAGGACGGCGAGAGAACCGGAGATTATATCTGAAGAGAGGAGGGTGAGTATTTTATCAAGGCATATTGGAAAATCGATAGTGGAAGCTTTGTGGCCGTTGGATGGGCAAGCGTATCCATCTGACGGTGGAGATGTGGGAAATCTTATCTATAGGCTTATCTGGAAGAAGTTACAGTCCGTTTCTTCACTTGACTCGTGTGGCGACAAAGTCTCCACACCACCGGCTGGTCCGGTTGCTTCATCGAATTCACTGGCTACTTGGTCGTACCCTCTTTTGTTTCCCTCTTTCTCCTCCCTCTACTACTATCTATCTCCCTTTGATTCTCTCTGTTTCTGTTTGGTTCTGCTTCGTCTTCAAGCTTCTCCCTCTTCTTCTTCTTCTTCTTCTCCTTCTTCGTCTTTTAAAGAATTAAAACGAAAATGAAGAACTTCAACAATGAAGGGTGGCAAGGGGAAGGGAGCAGTAAAGACCTCCAAGGAAGCATTGAAGCCTGTTGATGACAGAAAGGTTGGAAAGCGAAAGGCTGCGGCTAAACCTGAAAGAAGTAGTAAACGGCAGGCCAAGGCCAAGAAAGATCCAAACAAACCGAAAAGACCAGCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAACAACCTTTAAGAAAGAAAATCCTGGTGTGAAGGCGGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCATGACTGAAGCCGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAGAAACTTATGAATGCTTATAATAAAAAGCAGGCAAGCTCAGCAGATGATGGAGACGAGGAATCAGACAAGTCCAAGTCTGAAGTCAATGATGAAGAGGATGAAGAGGAGGCACACCAAGAGGAAGAGGAGGAAGAGGATGAAGATGAAAACGACGACGATGAGGGTGACGAAGATGACTGA 969 0.452 MNCRNRTAREPEIISEERRVSILSRHIGKSIVEALWPLDGQAYPSDGGDVGNLIYRLIWKKLQSVSSLDSCGDKVSTPPAGPVASSNSLATWSYPLLFPSFSSLYYYLSPFDSLCFCLVLLRLQASPSSSSSSSPSSSFKELKRKXRTSTMKGGKGKGAVKTSKEALKPVDDRKVGKRKAAAKPERSSKRQAKAKKDPNKPKRPASAFFVFLEEFRTTFKKENPGVKAVSAVGKAGGEKWKSMTEAEKAPYEAKAAKRKAEYEKLMNAYNKKQASSADDGDEESDKSKSEVNDEEDEEEAHQEEEEEEDEDENDDDEGDEDD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0191 322 MobiDBLite consensus disorder prediction 250 266 - -
Dere11g0191 322 SUPERFAMILY HMG-box 193 273 IPR036910 -
Dere11g0191 322 MobiDBLite consensus disorder prediction 158 202 - -
Dere11g0191 322 Gene3D High mobility group box domain 184 284 IPR036910 -
Dere11g0191 322 SMART hmgende2 200 271 IPR009071 -
Dere11g0191 322 Coils Coil 252 272 - -
Dere11g0191 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 151 305 IPR031061 -
Dere11g0191 322 Coils Coil 284 314 - -
Dere11g0191 322 Pfam HMG (high mobility group) box 201 270 IPR009071 -
Dere11g0191 322 MobiDBLite consensus disorder prediction 250 322 - -
Dere11g0191 322 MobiDBLite consensus disorder prediction 288 322 - -
Dere11g0191 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 201 270 IPR009071 -
Dere11g0191 322 CDD HMG-box_AtHMGB1-like 202 262 - -
Dere11g0191 322 MobiDBLite consensus disorder prediction 132 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0191 Dere-ChrDere11 3133250 3139330 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere11g0191 HMG_box 2.9e-23 CL0114