Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0189 ATGCGCAAATCTTTCAAGGACTCGCTTAAAGCTCTTGAAGCTGATATCCAGTTCGCAAATACCCTAGCTTCTGATTATCCGAGAGACAATGACGGTGCCTACATCCAAATGCGATTGTCCTACAGCCCAACAGCTCAATTTTTTCTTTTTCTAGTTCAGTGGACTGATTGTCACCTTGCAGGAGCCTTGGGATTGCTTAGAATTCTCATATACAAGGCATACGAGGATGGTAAGACAACGATGTCCATTTATGAAAGAAAAGCCAGTCTGAAGGAGTTCTACGGTGTGATCTTTCCCTCTTTATTGCAACTCCACAGAGGAATCACTGATGTAGAAGACAGGAAACAAAAAGAAATTTGTGCTACTAAGTATAAGCCAAAACCTGTAATAAGCAAAGGAAAGCTCTCTGAAATTGACAAAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGGTGAACAGCAAGATTGTATTGCCCAGTTGCAATCATTCCATGTGTATGAAGTGCTATCGAGACTGGCATGCACGATCTGAATCTTGTCCTTTCTGCCGGGACAGTCTGAAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAGCAACAGCGAGATAATTGACATGGCTTCAATCACAAAGGAGAATTTGAAGAGGTTATTTATGTACATTGAAAAGTTGCCTATTATTGTTCCAGATCCAATATTCATGTCTTATCCTGTCCGTTGGTGA 726 0.4105 MRKSFKDSLKALEADIQFANTLASDYPRDNDGAYIQMRLSYSPTAQFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTMSIYERKASLKEFYGVIFPSLLQLHRGITDVEDRKQKEICATKYKPKPVISKGKLSEIDKEREEECGICMEVNSKIVLPSCNHSMCMKCYRDWHARSESCPFCRDSLKRVNSGDLWIYMSNSEIIDMASITKENLKRLFMYIEKLPIIVPDPIFMSYPVRW 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0189 241 PANTHER RING FINGER PROTEIN 41, 151 3 236 - -
Dere11g0189 241 SUPERFAMILY RING/U-box 136 189 - -
Dere11g0189 241 SMART ring_2 146 183 IPR001841 -
Dere11g0189 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Dere11g0189 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 193 IPR013083 -
Dere11g0189 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Dere11g0189 241 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Dere11g0189 241 FunFam RING/U-box superfamily protein 129 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0189 Dere-ChrDere11 3127431 3130630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0189 90 188 C3H Transcription Factor Family AT5G01960 28.846 3.18e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g0189 12 3316426 3325581 Dere11g0189 11 3127431 3130630 CCT