Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0171 ATGGGGCACGCCCAGAGACGCATCGAGCTCGTTGCTTTGTCTTCTTTAGTCAAACCCGAATTTTATTCCGCGAAGGAGCCCTTGACAAGTCATCGGCGTGACCGTGGACTCGTGGGTCCCACATTTTTTCTTGTAGGCCCGTATGCGTGGCACGTGGACGCAGATGGTAGGCGTCTTCACGTGGGACGTGACAGAAAGCCGCAGCTTGGGATTAGAGAGTTTAATTTAATGGAAGGGCATCATCTCCATCATCAACAACATCATCTCCATCTTCATCGTCAATCACAGCAACATCAACAACAACAACATAGTATTGGTGGTGGTGTTACAGTTAACGTTGATGTGGGAGACAGGTTTCCTCAGTGGAGTATTCAGGAGACAAAGGAGTTTCTTATGATCCGACGAGAGCTAGATCAGACTTTTATGGAGACAAAGAGGAACAAGCAGTTATGGGAAATTATCTCCAACAGGATGAAGGAAAAGGGTTACCTTCGAAGCGCAGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTCACCAGATACAAGGGATGTGAAACAATGGAGCCAGAAGCTTTGAGGCAGCAATTCCCGTTTTTCAACGAGCTTCAGATGATTTTCGCGACGAGGATGGAGAGAATGCTGTGGGCAGAAGCGGAAGTAGGAGGGTCGAAGAAGAAGGCATTACAGAACCTCTCATCAGACGAAGAAGAAGACAATGATAACAACGAAGACAGTGAAGGAGAGAAAGGAGCAAGTAGTAGCAGGAAGAAGAAGAAGAACAAGAAGGGAAAGATGACGACAGGAGGTAGTGGAAGTAGTAGTAGCACTAATAATAGTTTGAGGAATATGAAGGAGATATTGGAGGAGTTTATGAGGCAACAGATGCAAATGGAGGCACAGTGGATGGAAGCATATGAGGCGAGAGAGAAGGAGAGGAGGATGAAGGAGCTAGAATGGAGGCAAACGATGGAGGCATTGGAGAATGAGAAGATAATGATGGACCAGAGATGGAGAGAAAGAGAAGATCAAAGAAGGCTCAGAGAAGAAGCTAGGGCTGAGAAGAGGGACGCTCTTATCACTGCACTTCTAAACAAGCTTACAAGAGACGACATGTAG 1116 0.4659 MGHAQRRIELVALSSLVKPEFYSAKEPLTSHRRDRGLVGPTFFLVGPYAWHVDADGRRLHVGRDRKPQLGIREFNLMEGHHLHHQQHHLHLHRQSQQHQQQQHSIGGGVTVNVDVGDRFPQWSIQETKEFLMIRRELDQTFMETKRNKQLWEIISNRMKEKGYLRSAEQCKCKWKNLVTRYKGCETMEPEALRQQFPFFNELQMIFATRMERMLWAEAEVGGSKKKALQNLSSDEEEDNDNNEDSEGEKGASSSRKKKKNKKGKMTTGGSGSSSSTNNSLRNMKEILEEFMRQQMQMEAQWMEAYEAREKERRMKELEWRQTMEALENEKIMMDQRWREREDQRRLREEARAEKRDALITALLNKLTRDDM 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0171 371 MobiDBLite consensus disorder prediction 229 279 - -
Dere11g0171 371 Coils Coil 280 300 - -
Dere11g0171 371 Pfam Myb/SANT-like DNA-binding domain 121 204 IPR044822 -
Dere11g0171 371 CDD GT1 120 185 - -
Dere11g0171 371 PANTHER FI21293P1 86 367 - -
Dere11g0171 371 Gene3D - 122 183 - -
Dere11g0171 371 FunFam Zinc finger and SCAN domain-containing 20 122 183 - -
Dere11g0171 371 ProSiteProfiles Myb-like domain profile. 122 178 IPR001005 -
Dere11g0171 371 MobiDBLite consensus disorder prediction 265 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0171 Dere-ChrDere11 2871246 2873703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0171 117 369 Trihelix Transcription Factor Family AT5G01380 53.506 1.05e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere11g0171 Myb_DNA-bind_4 7.9e-19 CL0123