Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0140 ATGGACGTGGACGTCGATGAAGCTTCTAAATCCCAAGAGAAAAAGCTCTTATTGGTCATGTTAGTGGGAGCACCAGGGAGCGGCAAATCCACCTTCTGCGAAGAAGTTATGCGCTCTTCTACTCGGCCTTGGGTTCGCGTTTGCCAGGACACAATTGGAAATGGTAAAGCAGGAAATAAAGCTCAATGCCTAAGCAGCGCAGCTGGAGCATTGAAGGACGGAAAGAGTGTATTTATTGACAGGTGTAATCTTGACCGAGAGCAGCGTTTGGGATTTGTCAAGCTTGGTGGACCCCAAATAGATGTGCATGCAGTTGTGCTTGATCTTCCTGCAAAGCTTTGTATTTCCCGATCTGTCAAACGGACTGGGCACGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTGGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCTAAGTTAAGTGAAGGGTTTAACCGGATAACAATTTGTCAGACTGAGAATGACATCAAAGCAGCTATTATGACATACAGTGCACTTGGGCCACTTGATAACCTTCCACATGGATGCTTTGGTCAGAAAAGTGCAGATACCAAAGTTCAAGTGGGCATAATGAAGTTCTTGAAAAAGGCGGAGGTCCCATTTGTCGCTGAGTCTATAGATAATAGCAGTAGAAATTTAAATTCCTCTCAAAAGGACGAGGTAATGGATCACTGCAGGAAAGATATGGAAAGTTTGTCATCAACCTCAGATAAAGCCAACTTAGTTTCAAAGAATGTAGAAAATGTTGCAGTTGGCTCTACTAGTTCCCATGTCAATATGGATAATGCTCCCACTTTGGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAACCATGAGAAGGCAGCTGATATTATTGTGGAGAAAGTTGCAGAGTTCTCAAATAAGCTTGAGAATGCCAGACTTGTTTTAGTTGACTTGACTCATGATTCGAAGATTGTGTCTTTAGTTAAAGCCAAAGCTACACAGAAAAACTTAGACTCCAGAAAGTTTTTTACCCATGTTGGGAACATTACTCAACTTAATTCCAGAGGAGGCTTGCGCTGTACTGTGATAGCTAATGCTGCCAACTGGCGATTGAAACCTGGAGGTGGAGGAGTTAATGCCGCAATTTTTAATGCTGCAGGTCCTGCCCTGGAGTCTGCAACCAAAGAACGAGCACAGTCTCTTTTACCTGGGAATGCTGTTGTTGTCTCTCTACCTTCATCTTCTCCTTTGTTTACTAGAGAGGGAGTAACCCATGTAATACATGTCCTTGGACCGAATATGAACCCACAGAGGCCAAATTGTCTCAATAATGATTACAATAAAGGCTGTAAGATTCTCAAAGAGGCTTACACTTCACTATTTGAAGCTTTTGCATCAGTTGTGAGGACTGGGGCAGAGCAAAAGTCCAAGAGAAATGCTGATCATGGATCAGAAAAAAGCAAGAAATACAAGGGAAGTCAGGACAATGTTGAAGTGAACTTCACTAATACCAAGGTTGAAAATGTAGATTCAAGTAATAAAAATACTGATGGCAGCATGAATAAGACATGGGGAACATGGGCTCAAGCTCTTCATCAAATGGCTATGCATCCTGAAAAGCATAAGGACAATTTGCTTGAGATAACTGATGATGTTCTTGTACTGAATGATCTGTATCCTAAGGCACAGAAGCATGTCCTGGTGCTGGCACGAACTGGAGGCCTTGATTGCCTGGCTGATGTTCAAAATGACCACCTTCACTTACTAAAGAAGATGCATGCTGTAGGTCTCAAGTGGGCCAAGAAGTTCTTGCATGAAAATGCTTCATTGGTCTTTCGTCTCGGATACCACTCGGCACCATCAATGCAGCAACTGCATTTGCATGTTATTAGTCAGGACTTTGAATCAAAACATTTGAAGAACAAGAAGCATTGGAACTCGTTCAACACTGTTTTCTTTCGTGACTCAGTAGATGTAATTGATGAAGTCTCTAATAATGGGAAAGCAACCTTGAATGATGATTACAAGTTGCTGTCCATGGAGTTGAGGTGCCATAGATGTAGAAGTGCACATCCTAACATTCCCAGGTTAAAATCTCATATTAGCAGTTGCCAAGCTCCCTTTCCTGCTCACCTACTTCAAAATGGTCGTTTGGTTCATGCACAAAGTGAAGTTAGCATCAGTCCATAG 2187 0.423 MDVDVDEASKSQEKKLLLVMLVGAPGSGKSTFCEEVMRSSTRPWVRVCQDTIGNGKAGNKAQCLSSAAGALKDGKSVFIDRCNLDREQRLGFVKLGGPQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFNRITICQTENDIKAAIMTYSALGPLDNLPHGCFGQKSADTKVQVGIMKFLKKAEVPFVAESIDNSSRNLNSSQKDEVMDHCRKDMESLSSTSDKANLVSKNVENVAVGSTSSHVNMDNAPTLAFPSISTSDFQFNHEKAADIIVEKVAEFSNKLENARLVLVDLTHDSKIVSLVKAKATQKNLDSRKFFTHVGNITQLNSRGGLRCTVIANAANWRLKPGGGGVNAAIFNAAGPALESATKERAQSLLPGNAVVVSLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYNKGCKILKEAYTSLFEAFASVVRTGAEQKSKRNADHGSEKSKKYKGSQDNVEVNFTNTKVENVDSSNKNTDGSMNKTWGTWAQALHQMAMHPEKHKDNLLEITDDVLVLNDLYPKAQKHVLVLARTGGLDCLADVQNDHLHLLKKMHAVGLKWAKKFLHENASLVFRLGYHSAPSMQQLHLHVISQDFESKHLKNKKHWNSFNTVFFRDSVDVIDEVSNNGKATLNDDYKLLSMELRCHRCRSAHPNIPRLKSHISSCQAPFPAHLLQNGRLVHAQSEVSISP 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0140 728 Pfam Macro domain 363 439 IPR002589 -
Dere11g0140 728 MobiDBLite consensus disorder prediction 470 493 - -
Dere11g0140 728 Pfam Scavenger mRNA decapping enzyme C-term binding 537 643 - -
Dere11g0140 728 SMART YBR022w_8 340 479 IPR002589 -
Dere11g0140 728 FunFam aprataxin isoform X2 524 704 - -
Dere11g0140 728 PANTHER APRATAXIN-RELATED 275 703 - -
Dere11g0140 728 Gene3D Leucine Aminopeptidase, subunit E, domain 1 229 320 IPR043472 -
Dere11g0140 728 ProSitePatterns HIT domain signature. 612 630 IPR019808 -
Dere11g0140 728 Pfam AAA domain 18 143 - -
Dere11g0140 728 ProSiteProfiles Macro domain profile. 328 566 IPR002589 -
Dere11g0140 728 Gene3D Leucine Aminopeptidase, subunit E, domain 1 321 467 IPR043472 -
Dere11g0140 728 SUPERFAMILY HIT-like 521 687 IPR036265 -
Dere11g0140 728 SUPERFAMILY Macro domain-like 271 316 IPR043472 -
Dere11g0140 728 MobiDBLite consensus disorder prediction 473 492 - -
Dere11g0140 728 Pfam C2HE / C2H2 / C2HC zinc-binding finger 648 701 IPR032566 -
Dere11g0140 728 Gene3D - 3 173 IPR027417 -
Dere11g0140 728 Gene3D - 525 706 IPR036265 -
Dere11g0140 728 SUPERFAMILY Macro domain-like 322 461 IPR043472 -
Dere11g0140 728 FunFam Transcription factor bHLH140 6 174 - -
Dere11g0140 728 FunFam Transcription factor bHLH140 321 468 - -
Dere11g0140 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 153 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0140 1 718 C2H2 Transcription Factor Family AT5G01310 60.027 0.0 879