Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0125 ATGATGCATCCTCATATTCTTCTTCACTCCTCTTCCTGTTCAGTCCACGATGACATATCCTCAGCTTGTGACCAATTCGACGCTTCCTCCATCTTCTCTGAAGATAATTTCCAATACCCACTTGACATGGGATCAGAAGCATCCAAATCGATAGAGCAATCCTGCATCAATGAATTCGGTGTTTCCTCCATCTTCTTACCTGAAGATCATTTCCAATACCCACTTGAAATGGGATCACAAGTGTCCAAATCCATGGAGCAATCCTCCATCAATGAGTGTGAAGTTTCCTCCATCTTTTTCTGTGGAGATAATCTCCATTACCCAGTTAATGAAGAAGATAATCTAGAACTTCCATCACTGACTGAGGATTTCTCTATGGATTTGGATGCTTTTGACCCCATTTTGGGTACCCAGATTCATGCACACCCTGTACAAAGTGAAGAAAGCTTTTTTCTTTCGCATAATCTCTCTTTTGAAGCAGAAGAAGGAGCTTGGAGTCCTAGCCCATCCCTGAAATCATCAGAATTTTCCACAGTTCAACCGCCACCGCTGAGCTTGCCACAAGAAGACATGGAAATTGAAACCCAATTGATTCTTCCACATCTTCTAGAAGCACACGGTGAAGCAAGAGATCAGAACCAGAATGCTCTAGCAGAAGAAATCCTGAGATGCATAAGCCAGAAAGCCAGTCCACTTGGAGAAGATCCTCTGGAACGCCTAGCATTCCACTATTCCTCCCAAAACATCACAAATAATATCACAGAATACCCTCAGGGGCATTTACTCAAACAGGAGGCGTGCAAGAATTTCCACTCTGCATTTAAGGCATTTTACCAAATCACCCCACATGGAAAATTTGCACATTTTACAGCCAATTCAGCAATTCTAGAAGCCATACCAGAGGATTCAGAGGTTATACACATAATAGACTTTGATATGGGAGAAGGGGTTCAATGGCCTCCAATGATGGAGGCCATTTCTCAACAGAACAGAACATTGAAATTAACATCAATCAAATGGGGAACAGGGGAAGAAAACTCTGAGAAACACATAAGGAACCTCGTTGAACATGCAATATCCTGCGGTCTAAAGTTGAAAATAGAAGAAAAGAGGTTTGAAGATTTGATTACCGAACTCAAGAAATTGAACAAAAGGGGTGGGAATATGAAGAGAGATTTTCTGGTCTTTAACTGCATGGTGGGCCTTCCTCATATGGGGAGAGGAAGAAGCAGAAGATCTGTCATGGAGTTTATAAATTTAGCAGAGAGCATGATAAACAAAAACACCTGCAACAGGGGAATTATCACTTTTGGGGATGGAGAAGCCACTGAGAAACTGAGAAGCAGCTTGAATTTCAGGTCATTCTTTGATGGGAATTTGGTGCATTACAAGGCCTTATTGGAATCAATTGAATCAAATTTCGCAGGATGTTTCTCGCAAGCAAGAATTGCCACGGAGTTCCTATTCGTGGGACCCTATGTGTCTTCACGTGCTTGGATGAAAAACTGGGAAGAACTTGGAGAAAATTGCCATTTTCAATCAGAGACTGGATTAAGGTTAGAGCATAGAAGATTAAGCAAAGGGATTTTAATAGTAGTGAGAGAAATGTTGAGGGGAAGCAGGGAAGGTTCATATGAGGCGAGGATCGAAGGACAGAATGGGAATCAAATGATTCTAGAATGGAAGAGAACGCAGCTGGTTAAAGTTTCTGTTTGGGGAAATTAA 1725 0.4168 MMHPHILLHSSSCSVHDDISSACDQFDASSIFSEDNFQYPLDMGSEASKSIEQSCINEFGVSSIFLPEDHFQYPLEMGSQVSKSMEQSSINECEVSSIFFCGDNLHYPVNEEDNLELPSLTEDFSMDLDAFDPILGTQIHAHPVQSEESFFLSHNLSFEAEEGAWSPSPSLKSSEFSTVQPPPLSLPQEDMEIETQLILPHLLEAHGEARDQNQNALAEEILRCISQKASPLGEDPLERLAFHYSSQNITNNITEYPQGHLLKQEACKNFHSAFKAFYQITPHGKFAHFTANSAILEAIPEDSEVIHIIDFDMGEGVQWPPMMEAISQQNRTLKLTSIKWGTGEENSEKHIRNLVEHAISCGLKLKIEEKRFEDLITELKKLNKRGGNMKRDFLVFNCMVGLPHMGRGRSRRSVMEFINLAESMINKNTCNRGIITFGDGEATEKLRSSLNFRSFFDGNLVHYKALLESIESNFAGCFSQARIATEFLFVGPYVSSRAWMKNWEELGENCHFQSETGLRLEHRRLSKGILIVVREMLRGSREGSYEARIEGQNGNQMILEWKRTQLVKVSVWGN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0125 574 ProSiteProfiles GRAS family profile. 190 573 IPR005202 -
Dere11g0125 574 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 174 566 IPR005202 -
Dere11g0125 574 Pfam GRAS domain family 201 572 IPR005202 -
Dere11g0125 574 Coils Coil 365 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0125 Dere-ChrDere11 1996176 1997900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0125 200 572 GRAS Transcription Factor Family AT5G66770 25.500 3.86e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere11g0125 GRAS 1.4e-38 CL0063