Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0123 ATGATGCATCCTCATATTCTTCTTCACTCCTCTTCCTGTTCAGTCCATGATGACATAACCTCGGCTTTTGACCAATTCGATGTTTCCTCCATATTCGTCTGTGAAGATCATTTCCAATACCCACTTGAAATGGGATCAGAAGCATCCAAATCCATGGAGCAATCCTACATCAATGAGTGTGAAGTTTCCTCCATCTTCTTCTGTGGAGATAATCTCCATTACCCAGTTAATGAAGAAGATAATCCAGAACTTCCATCACTGACTGAGGATATCTCTATGGATTTGGATGCTTTTGACCCCATTTTGGGTACCCAGATTCATGCATACCCTGAACAAAGTGAAGAAAGCTTTATTCTTTCGCAGAATCTCTCTTCTGAAGCTGAAGAAGGAGCTTGGAGTCCCAGCCCATCCCTGAAATCATCAGAATTTTCCACAGTTCAACCGCCACCTCTGAGCTTGCCACAAGAAGACATGGAAATTGAAATCCAATTCATTCTTCCACATCTTCTAGAAGCATACGGTGAAGCAAGAGATCAGAACCAGAATACCCTAGCAGAAGAAATACTGAGATGCATAAGCCAGAAAGCCAGCCCACTTGGAGAAGATCCTCTGGAACGCCTAGTATTCCACTATTCCTCCCAAAACGTCATAAATAATGTCACAGAAAACCCTCAGTGGCATTTACTCAAACAGGAGGCGTGCAAGAATTTTGACCCTGCATTTAAGGCATTCTACCAAATCACCCCACATGGAAAATTTGCACATTTTACAGCCAATTCAGCAATTCTAGAAGCCATACCAGAGGATTCAGAGGTTATACACATAATAGACTTTGACATGGGAGAAGGGCTTCAATGGCCTCCGATGATAGAGGCCATTTCTCAACAGAACAGAACATTGAAATTAACATCAATCAAATGGGGAACAGAGGAAGAAAACTCTGAGAAACACAGAAGGAACTTCATTGAACATGCAAGATCCTGTGGTCTAAAGTTGACGATAGAAGAAAAGAGTCTTGAGGATTTGATTACAGAACTCAAGAAATTGAACATAAGGGCTGGGAATATGAAAAGAGATTTTCTGGTCTTTAACTGCATGGTGGGTCTTCCTCATATGGGGAGAGGAAGAAGCCGAAGATCGGTCATGGAGTTTATAAATTTAGCCGAGAGCATGATAAGCAAAAACACCTGCAACAGGGGAATTATCACTTTTGGGGATGGAGAAGCCACTGAGAAACTGAGAAGCAGCTTGAATTTCAGGTCATTCTTTGATGGGAATTTGATGCATTACAAGGCCTTATTGGAATCAATTGAATCAAATTTTACAGGATGTTTCTTACAAGCAAGAATTGCCATGGAGTTCCTATTTGTGGGACCCTATGTCTCTTCTCTTGCTTGGATGAAGAACTGGGAAGAACTGAGAGAAAATTGCCATTTTCAATCAGAGATTGGATTTGGGTTAGAGGGTAGAAGATTAAGCAAAGGGATTTTAATGGAAGTGAGAGAAATGTTGAGTGGAAGCAGGGAAGGTTCATATGAGGCAAGGATCGAAGGACAGAATGGGAATCAAATGGTTCTAGGATGGAATGGAGCGCAGCTGGTTAGAGTTTCCGTTTGGGGAAATTAA 1626 0.4157 MMHPHILLHSSSCSVHDDITSAFDQFDVSSIFVCEDHFQYPLEMGSEASKSMEQSYINECEVSSIFFCGDNLHYPVNEEDNPELPSLTEDISMDLDAFDPILGTQIHAYPEQSEESFILSQNLSSEAEEGAWSPSPSLKSSEFSTVQPPPLSLPQEDMEIEIQFILPHLLEAYGEARDQNQNTLAEEILRCISQKASPLGEDPLERLVFHYSSQNVINNVTENPQWHLLKQEACKNFDPAFKAFYQITPHGKFAHFTANSAILEAIPEDSEVIHIIDFDMGEGLQWPPMIEAISQQNRTLKLTSIKWGTEEENSEKHRRNFIEHARSCGLKLTIEEKSLEDLITELKKLNIRAGNMKRDFLVFNCMVGLPHMGRGRSRRSVMEFINLAESMISKNTCNRGIITFGDGEATEKLRSSLNFRSFFDGNLMHYKALLESIESNFTGCFLQARIAMEFLFVGPYVSSLAWMKNWEELRENCHFQSEIGFGLEGRRLSKGILMEVREMLSGSREGSYEARIEGQNGNQMVLGWNGAQLVRVSVWGN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0123 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 141 533 IPR005202 -
Dere11g0123 541 MobiDBLite consensus disorder prediction 128 151 - -
Dere11g0123 541 ProSiteProfiles GRAS family profile. 157 540 IPR005202 -
Dere11g0123 541 Coils Coil 332 359 - -
Dere11g0123 541 Pfam GRAS domain family 168 539 IPR005202 -
Dere11g0123 541 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0123 Dere-ChrDere11 1875345 1876970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0123 156 539 GRAS Transcription Factor Family AT5G66770 25.304 1.03e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere11g0123 GRAS 3.5e-42 CL0063