Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0108 ATGAGCAGGGGTCAATTTGTTCTGTGGAATGGCAAAGGAAGAGAGGATGGTGATGCGAAATGGGAAGTCGAGGAAGAGACGAAGAAATGGAAGCGACTCTTCTGTGTTAGAAGCTTCAAAGTGGATAGAGTCACAGTGAACTTGACTTTTCTCAAAATGAGAGGAGTGAGACAGAGGATCTGGGGAAAGTGGGTTGCTGAAATTAGAGAACCCATTAAAAGTAACCATGTGGGTATTAGGAAAGCAAATAGACTCCGGCTTGGTACTTTCTCCACTACACTTGAAGCTGCTCTTGCTTATGATGAAGCAGCCAAGGCCATACATGGCGGTTATGCCCGTTTGAACTTTCATACAGAGGCAGACCAGAAGTGGGTTATGATTATAGTTTCTTAA 393 0.4402 MSRGQFVLWNGKGREDGDAKWEVEEETKKWKRLFCVRSFKVDRVTVNLTFLKMRGVRQRIWGKWVAEIREPIKSNHVGIRKANRLRLGTFSTTLEAALAYDEAAKAIHGGYARLNFHTEADQKWVMIIVS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0108 130 Gene3D AP2/ERF domain 52 119 IPR036955 GO:0003700|GO:0006355
Dere11g0108 130 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 52 119 - -
Dere11g0108 130 ProSiteProfiles AP2/ERF domain profile. 52 117 IPR001471 GO:0003700|GO:0006355
Dere11g0108 130 SUPERFAMILY DNA-binding domain 52 118 IPR016177 GO:0003677
Dere11g0108 130 CDD AP2 52 116 IPR001471 GO:0003700|GO:0006355
Dere11g0108 130 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Dere11g0108 130 PRINTS Ethylene responsive element binding protein signature 99 119 IPR001471 GO:0003700|GO:0006355
Dere11g0108 130 Pfam AP2 domain 52 109 IPR001471 GO:0003700|GO:0006355
Dere11g0108 130 SMART rav1_2 52 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0108 Dere-ChrDere11 1690838 1693260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0108 51 116 AP2-EREBP Transcription Factor Family AT5G05410 63.636 4.56e-20 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere11g0108 AP2 9.2e-13 CL0081