Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0055 ATGGACGATGAGGTTTACAAGCTTAGAAGCATTGATGGTGACCTTGTTGGTGGGGTTAGAGATTCATGGAGGTTAAAAACAGATCCTATATCTGTAACTTGGCATTCCAGAAGACCAGAACCCAATGGTAGTAGATGGAACATCCATAGCTACCTGTTGAATCCTGAAAGCTTCTGCTTTGTGTGGTTCCTTGTGCCTACCACCTGTATGATGCAATTCATCCTACTCCTGCTCTTTCTTTTTGCTCTCGCCACAGTACTTTCCAACGACCCAGCGTTCAATGACGACGTGTTGGGCTTGATTGTCTTCAAAGCGGGTCTGGAGGACCCGAAAGCTAAGCTCTCTACTTGGAACGAAGATGATGATAATCCCTGCAAGTGGGTCGGAGTCAAATGTGATTCTACTATCAATCGGGTCTCTGCTCTTGTCCTTGACGGCCTTTTTCTTTCTGGGCATATTGATCGAGGGCTCTTGAGATTACAATTCCTTCAAATTCTTTCACTTTCCAAGAACAACTTCACTGGGTCCATAAGCCCAGATCTTCTTCGCCATGGGAGTTTGCAAGTTGTGGACTTAAGTGAGAACAACCTCTCTGGGTCTATACCAGAAGGGTTCTTCCAGCAATGTGGGTCCGTAAGATCAGTTTCATTTGCCAAAAACAATCTTACAGGTAAGATTCCTGATTCTTTGAGCTCTTGCCCCATGTTAGCAACTGTTAACTTTTCTTCCAATCAGCTATCTGGGAATTTACCTTCTGGGATATGGTTTTTGAGGGGACTACAGTCACTTGATCTCTCAAATAACTTGCTGGAGGGAGAGATTCCTGAGGGAATTCAGAATTTGTATGATTTGAGGGAGTTAAGTCTACAGAAGAATCGCTTGATTGGGAGGCTTCCTGGGGATATTGGTGGATGCATGCTTTTAAAATCACTTGATTTCAGTGATAATTTTCTCTCTGGGACACTTCCTGAGTCAATACAGAGACTCAGCTCCTGCACATCCCTCAGTTTACAAGGGAATTCATTTACAGGAAGCATTCCTGATTGGATTGGAGAATTAAAAAACCTGGAGATGTTGGATCTTTCAGCAAATAGATTTTCTGGTCGGATTCCAAAATCAATAGGAAATCTTGACACACTTAATAAATTGAATTTATCCAGGAATCATTTGACAGGAAACTTGCCAGAATCAATGGTAAACTGTGTTAAGCTTTTGGCTCTAGATATCAGCCATAATCATTTAGAAGGGTATCTTCCTTCATGGATTTTCAGGATGGGTTTACAAAGTATATCACTTTCAGGGAACACCTTCAGTAGGAGCAATTATTCTTCATTTTCCTCCATACCTGCATCTTATCATGGCCTTCAGATTTTGGATTTGTCATCAAATGCTTTTTCTGGCGAACTTCCATCAAACATTGGGGGCCCTAGTAGCTTGCAAATCTTAAGTATGTCCGCCAACAATATCTCTGGTCCTATTCCAGTAGGTATAGGAGAACTTAAATCTTTATACATCCTTGACTTGAGTGACAACAAGCTTAATGGAAGCATTCCTCCTGAAATAGAAGGGGCATTTTCACTCAGTGAAATGCGGCTACAGAACAACTTCCTAGGTGGGAAAATTCCAGCCCAAATTGAAAAGTGCTCTTCTCTAACAACTTTGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCAGCAGCCATTGCAAACCTGACTAATCTTCAATATGTAGACTTGTCTTGGAACGAACTCTCTGGAAGCTTACCCAAGGATCTTGCAAATCTTTCTCGCCTTTTATCTTTCAATGTATCCTACAATCACCTTCAAGGGGAGCTTCCAGTTGGTGGCTTCTTCAATATCATCTCTCCCTCATCTGTCTCTGGTAATCCATCGTTATGTGGTTCTGTTGTCAATCACTCCTGCCCTTCTGTCCATCCCAAACCTATTGTCCTTAACCCCAATTCTTCTTACTCCAATTCTAACAGTTCCTCTCTAAGCAATGGTCATAAGAAGATCATTCTTAGTGTCTCTGCTCTTATTGCTATTGGTGCTGCTGCTTTTATCACCATTGGTGTGGTGGCTATTACTGTCCTAAACATCCATGTTCGTCATTCAATGTCACGTCCTGCTGCCTCATTTGCATTCTCTGGTGGTGAGGACTATAGCTGTTCTCCTGCAAATGATCCAAACTATGGCAAGCTTGTAATGTTCTCTGGTGATGCTGGCTTTGATGATGGGGCACATAATCTCCTAAACAAAGACAGTGAGATAGGTCGTGGTGGATTTGGAGTTGTTTATCACACTGTCCTTCGAGATGGGCATTCTGTTGCAATAAAGAAGCTTACAGTCTCTGGATTGATCAAGTCACAAGAAGACTTCGAGAGGGAAGTAAAAAATCTTGGGATGATCCGACACCTGAATCTTGTGGGACTTAAAGGGTATTACTGGACATCATCCTTGCAGCTTCTTATTTATGAGTATCTATCGAGAGGAAGTTTGCATAAGCTTCTACATGATGAAAATGAGTATAGCAGGAACTTGCTTTCATGGCGACAAAGGTTCAAGATTATTCTTGGAATGGCAAGAGGATTGGCCCATTTGCACCAGTCGAACATAATCCACTACAATCTAAAATCCATGAATGTTTTGATCGATTGCTCTGGTGAGCCAAAAATAGGAGATTTTGGCTTGGTGAGGCTGCTGCCAGTGCTAGACCATTGTGTTTTGAGTAGCAAAATTCAAAGTGCACTTGGTTACATGGCTCCTGAGTTTGCATGCCGGACAGTGAAGATAACTGAGAAATGTGATGTGTATGGTTTTGGGATCCTGGTTCTCGAGGTGGTGACCGGGAAAAGACCGGTGGAATATATGGAGGATGATGTGGTTGTTCTGTGTGAAATGGTAAGAGGTGCACTGGAGGAAGGCAGGGTGGAGCAATGTGTGGATGGGAGGCTTCTGGGTAATTTTGCTGCTGAGGAAGCAATTCCTGTGATAAAATTGGGATTAATTTGTGCATCACAAGTGCCTTCAAACCGTCCAGATATGGCTGAGGCAGTCAACATTTTAGAGTTGATCCAATGCCCTTCAGAAGGACAAGAGGATTTAGAATGA 3114 0.4249 MDDEVYKLRSIDGDLVGGVRDSWRLKTDPISVTWHSRRPEPNGSRWNIHSYLLNPESFCFVWFLVPTTCMMQFILLLLFLFALATVLSNDPAFNDDVLGLIVFKAGLEDPKAKLSTWNEDDDNPCKWVGVKCDSTINRVSALVLDGLFLSGHIDRGLLRLQFLQILSLSKNNFTGSISPDLLRHGSLQVVDLSENNLSGSIPEGFFQQCGSVRSVSFAKNNLTGKIPDSLSSCPMLATVNFSSNQLSGNLPSGIWFLRGLQSLDLSNNLLEGEIPEGIQNLYDLRELSLQKNRLIGRLPGDIGGCMLLKSLDFSDNFLSGTLPESIQRLSSCTSLSLQGNSFTGSIPDWIGELKNLEMLDLSANRFSGRIPKSIGNLDTLNKLNLSRNHLTGNLPESMVNCVKLLALDISHNHLEGYLPSWIFRMGLQSISLSGNTFSRSNYSSFSSIPASYHGLQILDLSSNAFSGELPSNIGGPSSLQILSMSANNISGPIPVGIGELKSLYILDLSDNKLNGSIPPEIEGAFSLSEMRLQNNFLGGKIPAQIEKCSSLTTLILSHNKLTGSIPAAIANLTNLQYVDLSWNELSGSLPKDLANLSRLLSFNVSYNHLQGELPVGGFFNIISPSSVSGNPSLCGSVVNHSCPSVHPKPIVLNPNSSYSNSNSSSLSNGHKKIILSVSALIAIGAAAFITIGVVAITVLNIHVRHSMSRPAASFAFSGGEDYSCSPANDPNYGKLVMFSGDAGFDDGAHNLLNKDSEIGRGGFGVVYHTVLRDGHSVAIKKLTVSGLIKSQEDFEREVKNLGMIRHLNLVGLKGYYWTSSLQLLIYEYLSRGSLHKLLHDENEYSRNLLSWRQRFKIILGMARGLAHLHQSNIIHYNLKSMNVLIDCSGEPKIGDFGLVRLLPVLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGKRPVEYMEDDVVVLCEMVRGALEEGRVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEAVNILELIQCPSEGQEDLE 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0055 1037 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 373 646 - -
Dere11g0055 1037 Gene3D Ribonuclease Inhibitor 280 356 IPR032675 -
Dere11g0055 1037 Pfam Leucine rich repeat 308 366 IPR001611 GO:0005515
Dere11g0055 1037 Pfam Leucine rich repeat 526 585 IPR001611 GO:0005515
Dere11g0055 1037 PRINTS Leucine-rich repeat signature 260 273 - -
Dere11g0055 1037 PRINTS Leucine-rich repeat signature 500 513 - -
Dere11g0055 1037 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 94 372 - -
Dere11g0055 1037 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 746 828 - -
Dere11g0055 1037 Pfam Leucine Rich Repeat 260 281 IPR001611 GO:0005515
Dere11g0055 1037 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 426 519 IPR046959 -
Dere11g0055 1037 SUPERFAMILY Protein kinase-like (PK-like) 754 1027 IPR011009 -
Dere11g0055 1037 Gene3D Ribonuclease Inhibitor 97 206 IPR032675 -
Dere11g0055 1037 Gene3D Ribonuclease Inhibitor 207 279 IPR032675 -
Dere11g0055 1037 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 829 1032 - -
Dere11g0055 1037 Gene3D Ribonuclease Inhibitor 357 645 IPR032675 -
Dere11g0055 1037 ProSitePatterns Protein kinases ATP-binding region signature. 758 781 IPR017441 GO:0005524
Dere11g0055 1037 Gene3D Phosphorylase Kinase; domain 1 746 828 - -
Dere11g0055 1037 SUPERFAMILY L domain-like 119 372 - -
Dere11g0055 1037 SMART LRR_sd22_2 257 280 - -
Dere11g0055 1037 SMART LRR_sd22_2 500 523 - -
Dere11g0055 1037 SMART LRR_sd22_2 353 379 - -
Dere11g0055 1037 SMART LRR_sd22_2 572 598 - -
Dere11g0055 1037 Pfam Leucine rich repeat N-terminal domain 94 133 IPR013210 -
Dere11g0055 1037 SMART LRR_typ_2 548 571 IPR003591 -
Dere11g0055 1037 SMART LRR_typ_2 185 208 IPR003591 -
Dere11g0055 1037 SMART LRR_typ_2 353 377 IPR003591 -
Dere11g0055 1037 SMART LRR_typ_2 160 184 IPR003591 -
Dere11g0055 1037 SMART LRR_typ_2 257 280 IPR003591 -
Dere11g0055 1037 SMART LRR_typ_2 500 524 IPR003591 -
Dere11g0055 1037 SMART LRR_typ_2 281 305 IPR003591 -
Dere11g0055 1037 SMART LRR_typ_2 572 595 IPR003591 -
Dere11g0055 1037 SMART LRR_typ_2 596 620 IPR003591 -
Dere11g0055 1037 SMART LRR_typ_2 452 476 IPR003591 -
Dere11g0055 1037 Gene3D Transferase(Phosphotransferase) domain 1 829 1035 - -
Dere11g0055 1037 Pfam Protein kinase domain 753 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g0055 1037 SUPERFAMILY RNI-like 321 620 - -
Dere11g0055 1037 ProSiteProfiles Protein kinase domain profile. 752 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0055 Dere-ChrDere11 689036 696216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0055 73 1036 Receptor kinase-like Gene Family AT3G56370 61.983 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Dere11g0055 Pkinase 7.5e-40 CL0016