Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0037 ATGGAGGAGAGCGAGGAAGAAGATGACGAAAGGGAGAGTGAAAGACGAATGGACAGAGGCATTGTGCGTCCATTTGCCCTCTTTAGCAAGAATGTTGATGGGAATGAAAGGGTGAGATATCCTCGTTTGGTTCCTGGACACGTCTTCAGCTGGAAAATGCTAACCCTCAATGCTGTTCCCCCTTATTCGCTATCAGTTGTTCCCTTCGACGGCAGCTATCAAGTGCCTGGTCAATTTTTAGTTCCTGCGAATCTAAATCACTGGTCCGCGAGAGCAAGTAGAAAGTTCAAGACTTTTCAGCTCAAGTCTGGATTCTGGGAATCAATAAAAACTGGGTTGTTGAAGAATAACACAACACAAGTTGTCGACCCACCCCCTGCAGATGAAGAAGAAGATGACCCTCTGCCTCTAGAATTTGTTCTTGTTGAAAAACCTGAACTTGATGGAACAATTGAGCAAATTATATTCTCTTCGGGTGGAGATATTGATGTTTATGATCTTCAAGCCCTTTGTGATAAGGTAGGGTGGCCTCGGAGGCCTTTGTCTAAATTAGCTGCTGCTTTAAAGAATAGCTATATGGTGGCCTCACTGCATTCCATAAGAAAGACACCAGGGTCAGAGGGACATGAACAGAAGAAACTAATTGGCATGGCCCGTGCTACATCAGACCATGCCTTCAATGCTACAATTTGGGACGTCCTAGTTGATCCTAGCTATCAGGGCCAAGGCCTTGGTAAGGCTCTTGTGGAGAAATTGATTCGGGCTCTTCTGCAAAGAGATATTGGAAATATAACTCTGTTTGCAGATAGTCAAGTTGTGGAATTTTATCGCAATTTAGGTTTTGAACCTGACCCTGAGGGCATAAAAGGCATGTTTTGCAACCCCATCGGCAAAGAAGAACTTGGACCCCGAAAAATCAATCCTTTGCTGCATAATATTTGCATGGGTCATGCAACTTTATGTCGTTTATCTATGCACATAATATTCAGCTCTTGCAGATTATACTGCACTAGTACAGCGATTTCATTGAATTCTTTAATAGCAAACTACTCTCGCACTGGTCAAATTGAGAATGCTCGGAGGGTGTTTGATCAAATGCGTGAAAGAAGCGTCACTTCGTGGAATGCCATCATTTCTGGGTACTTTCAAAATAAGCAACCTCGTGAAGCCAAGCTTCTGTTTGACAGGATGCCCGAGAGGAATACAGTTTCTTGGAATGCTTTAATTTCTGGATACGTCAAAAATGGAATGGTTAGTGAAGCAAGGAAAATATTTAATATGATGCCTGAGCGGAATGTTGTTTCATGGACGGCAATGGTTAGGGGCTATGTGCAACAGGGTATGATTGCAGAGGCAGAATCAATTTTCTGGCAAATGCCTGAAAAGAATGTGGTATCATGGACAGTAATGTTGGGTGGGTTACTACAGGAAGGTCGACTTGAGGATGCACGCAGGCTATTTGAGATCATGCCAGGGAAAGATGTAGTGGCCAGGACTAACATGATTGGAGGATATTGTCAACAAGGCCGTTTGGCTGAAGCACGAGAACTCTTTGATGAAATGCCACGAAGGAATACTATTACTTGGACAACGATGATTTCAGGGTACTCACGTAATCAGCAGGTGGACATTGCTAGGAAGCTTTTTGAAGTAATGCCTGAGAAAAATGAGGTGTCTTGGACAGCGATGCTTATGGGTTACACTCACTGTGGGCGGATTGAAGAGGCTTCAGAGCTTTTTCATGCAATGCCATTAAAGTCAATTGTTGCTTGTAATGAAATGATCATGGGATTTGGTCTTAGTGGGGAGATAGCCAAAGCAAGACAGGTTTTTGAGCAAATGAAGGAGAGGGATGATGGCACATGGAGTGCAATAATTAAGGTTTATGAGCGAAAAGGATTTGAGTTGGAAGCACTAGGCATGTATATGCGGATGCAAAGAGAAGGGGTTGGGTTAAATTTCCCTTCTTCGATCAGTGTTCTTTCTGTCATTGCCAGCCTTGCTAGTCTTGATTATGGTAGGCAGGTTCATGCTCAGTTGGTAAGATCCCAATTTGATCATGATATATATGTTGCCTCGGTTTTGATTACAATGTATGTTAAATGCGGTGATCTTGTGAAAGCAAGCGAGGTTTTCAAAATGTTTGCTTTTAAGGATGTCGTTATGTGGAACTCAATGATCACAGGTTATGCTCAGCATGGTTTGGGGGAAGAAGCTTTAGATATTTTCCATGAGATGTGTTCCTCGGGAGTTTTACCGGATAATGTTACCTTCGTTGGAGTTCTTTCGGCTTGTAGTTACAGTGGAAAGGTGAATCAAGGGCTTGAATTTTTTAGATCAATGGAAAGCAAATATCAAGTGGAGCCAGAAATAGAACACTATGCTTGCATGGTTGATTTGCTTGGCAGAGCAGGCAAGGTAAATGATGCCGTGGAGCTAATAGAAAACATGCCAATGGAAGCAGATGCCATTATTTGGGGTGCATTGCTAGGTGCATGCAAAATCCATACGAATCTTGATGTGGCTGAAGTAGCAGCAGAGAAACTAACACAGCTTGAACCCAAAAATTCCGGGCCTTACGTCTTGCTTTCAAACCTATACGCATCTAGAGGAAAATGGGTGGATGTCGAAAACCTTAGGAAAAAAATTAGAGCTAGGAGTGTGAGCAAATCACCTGGCTGCAGTTGGATTGATGTGGAGAAGAAGGTGCATATGTTCACTGGGGGAGATAGCAAAGGTCATCCCGAGCAGCCTGCTATCGTGAAATTGTTGCAGAGGCTAGGTGGACTGATAAGGGAAGCTGGGTACTGTCCTGATGGTAGTTTTGTGCTTCATGATGTGGACGAGGAAGAGAAGACTCATAGCTTAGGTTATCATAGTGAAAAACTGGCAGTAGCATATGGACTTTTAAAAGTACCTGAAGGGATGCCGATTAGAGTTATGAAAAATTTACGGGTTTGTGGTGACTGCCATTCTGCAATCAAATTAATATCAAAAGTCACTGGGAGGGAGATTATTTTGAGGGATGCTAATAGATTTCATCACTTTAAGGATGGTTATTGTTCTTGCAAAGACTATTGGTTCGCGGTTGGAAAGTCAAATGCTGAATTTCAAAATGAGGTTTCACAAAAGCTCAGAGCTGCTCCCCATAAGAATGTAGGAAGCATAGTAATTGATGGCACGGGCGTAGAAAATTCCTATAAGTTTGTGGATTCGAATAATTTGATTGTGCAATGGGATGGCATGTTGGCTGCAACCTTTGTTCTCATACGGGAAGGGCAGGACCATGACTCAGGGAACTGGGTCGTGACTGGGATTCTAGCTGGTGGCATTTTCGTTTGGCTATTCTCTAATACCAATGCTGAAAATCCAGAAATAGCACATTCTACTAGAGCAGCTACTAACTTTCTACTACTACTGTTTCAGTTTCTTGAGCAATATGGAGAAGTAAGCATGTTGGATATAAAGGGCGCTGATGCAATTAAAGTTGTTCTGGTAATTGGAATTATGACTCTCCACTCTTTTGGGGAGGGTTCTGGAGTTGGGGTCACAGTTGCTGGTCCAAAGGGTTTCCTTTCAAGGCTTTTTGACCTTGGCTTCTTACCATCTATGCTATTGTTAATGCAGCCAGTAGTAGCCATTCCTTGTTTTATATGTGCGGATGCATTTAGTAAGTTCCTGCCTTTCTGTACGGGGCTTGCTGCTGGATGCATGATCTGGATGGTTGTTGCAAAAGTGCTACCTGATGCATTAAAGTATCATTATGGCCTCCAACTTGTAGAGCAAGGTATCACCGGGATTAAACCACATGAAGGCTTGCTGAGCCTGCCATATACCTATGACTTTGGGTGTTTCTTTAGGGATACTTCCGGCTTCTATGTTTCGTTATCTTTTGGCCTTGGCCCTTTACTTGGGGGGATCATTTTAGTTGCAATTGCTCTTGCTTTTCATCTTCAGCATACTCTCCTTATGGGCCTTAGTGCTTGGTGCCTGGAGACCAGTGTGGCTTATTTTGTCATCAAAATTGGTGGGAATTATCCCCTTTGTGTTACTCCTTCCAACGGGGCTGCTTTCATCCATGTTTGA 4086 0.4302 MEESEEEDDERESERRMDRGIVRPFALFSKNVDGNERVRYPRLVPGHVFSWKMLTLNAVPPYSLSVVPFDGSYQVPGQFLVPANLNHWSARASRKFKTFQLKSGFWESIKTGLLKNNTTQVVDPPPADEEEDDPLPLEFVLVEKPELDGTIEQIIFSSGGDIDVYDLQALCDKVGWPRRPLSKLAAALKNSYMVASLHSIRKTPGSEGHEQKKLIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKLIRALLQRDIGNITLFADSQVVEFYRNLGFEPDPEGIKGMFCNPIGKEELGPRKINPLLHNICMGHATLCRLSMHIIFSSCRLYCTSTAISLNSLIANYSRTGQIENARRVFDQMRERSVTSWNAIISGYFQNKQPREAKLLFDRMPERNTVSWNALISGYVKNGMVSEARKIFNMMPERNVVSWTAMVRGYVQQGMIAEAESIFWQMPEKNVVSWTVMLGGLLQEGRLEDARRLFEIMPGKDVVARTNMIGGYCQQGRLAEARELFDEMPRRNTITWTTMISGYSRNQQVDIARKLFEVMPEKNEVSWTAMLMGYTHCGRIEEASELFHAMPLKSIVACNEMIMGFGLSGEIAKARQVFEQMKERDDGTWSAIIKVYERKGFELEALGMYMRMQREGVGLNFPSSISVLSVIASLASLDYGRQVHAQLVRSQFDHDIYVASVLITMYVKCGDLVKASEVFKMFAFKDVVMWNSMITGYAQHGLGEEALDIFHEMCSSGVLPDNVTFVGVLSACSYSGKVNQGLEFFRSMESKYQVEPEIEHYACMVDLLGRAGKVNDAVELIENMPMEADAIIWGALLGACKIHTNLDVAEVAAEKLTQLEPKNSGPYVLLSNLYASRGKWVDVENLRKKIRARSVSKSPGCSWIDVEKKVHMFTGGDSKGHPEQPAIVKLLQRLGGLIREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLISKVTGREIILRDANRFHHFKDGYCSCKDYWFAVGKSNAEFQNEVSQKLRAAPHKNVGSIVIDGTGVENSYKFVDSNNLIVQWDGMLAATFVLIREGQDHDSGNWVVTGILAGGIFVWLFSNTNAENPEIAHSTRAATNFLLLLFQFLEQYGEVSMLDIKGADAIKVVLVIGIMTLHSFGEGSGVGVTVAGPKGFLSRLFDLGFLPSMLLLMQPVVAIPCFICADAFSKFLPFCTGLAAGCMIWMVVAKVLPDALKYHYGLQLVEQGITGIKPHEGLLSLPYTYDFGCFFRDTSGFYVSLSFGLGPLLGGIILVAIALAFHLQHTLLMGLSAWCLETSVAYFVIKIGGNYPLCVTPSNGAAFIHV 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 558 588 IPR002885 -
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 342 371 IPR002885 -
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 500 524 IPR002885 -
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 403 434 IPR002885 -
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 527 556 IPR002885 -
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 434 464 IPR002885 -
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 373 401 IPR002885 -
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 589 618 IPR002885 -
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 465 495 IPR002885 -
Dere11g0037 1361 NCBIfam pentatricopeptide repeat 721 754 IPR002885 -
Dere11g0037 1361 FunFam Pentatricopeptide repeat-containing protein 524 586 - -
Dere11g0037 1361 FunFam Putative acetyltransferase NSI 158 294 - -
Dere11g0037 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Dere11g0037 1361 Gene3D - 158 294 - -
Dere11g0037 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Dere11g0037 1361 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 340 400 IPR046960 GO:0003723|GO:0009451
Dere11g0037 1361 FunFam Pentatricopeptide repeat-containing protein 432 493 - -
Dere11g0037 1361 Pfam DYW family of nucleic acid deaminases 935 1027 IPR032867 GO:0008270
Dere11g0037 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Dere11g0037 1361 SUPERFAMILY TPR-like 505 631 IPR011990 GO:0005515
Dere11g0037 1361 Pfam Acetyltransferase (GNAT) family 164 281 IPR000182 GO:0016747
Dere11g0037 1361 CDD NAT_SF 210 266 - -
Dere11g0037 1361 Pfam E motif 836 898 IPR046848 -
Dere11g0037 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 493 IPR002885 -
Dere11g0037 1361 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 154 308 IPR000182 GO:0016747
Dere11g0037 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Dere11g0037 1361 FunFam Os03g0317100 protein 656 772 - -
Dere11g0037 1361 FunFam Pentatricopeptide (PPR) repeat-containing protein 782 946 - -
Dere11g0037 1361 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 163 287 IPR016181 -
Dere11g0037 1361 Pfam PPR repeat family 718 765 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 434 464 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 342 370 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 373 401 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 465 494 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 527 556 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 403 433 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 558 585 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 794 818 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 499 525 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 693 714 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 589 617 IPR002885 -
Dere11g0037 1361 Pfam PPR repeat 621 650 IPR002885 -
Dere11g0037 1361 Gene3D Tetratricopeptide repeat domain 737 917 IPR011990 GO:0005515
Dere11g0037 1361 Gene3D Tetratricopeptide repeat domain 343 492 IPR011990 GO:0005515
Dere11g0037 1361 Gene3D Tetratricopeptide repeat domain 493 653 IPR011990 GO:0005515
Dere11g0037 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 719 753 IPR002885 -
Dere11g0037 1361 FunFam Pentatricopeptide repeat-containing protein 370 431 - -
Dere11g0037 1361 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0037 Dere-ChrDere11 485782 503418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0037 478 853 Glycoside Hydrolase AT3G49170 26.617 6.55e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Dere11g0037 DYW_deaminase 4.4e-39 CL0109