Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0027 ATGGAAAAGCCGCAGTTTGTTACAAATGGGATGATGCTAGATTTCTCTATAAATAATTTTGGAGGAGGGTCTTCAACGGAGTTTCGCTATCGTAGGGTTAGGGCATTCTCCCATATGGATGCATCTGCTACCAATTCCGATATGTTCAGGGCTCCCCAGGGCACTTCTAATTCAAGAAGATACGGAATCCTATCCGCCTCCAATATATTTCAGGCACCCTTGTCGGTGTTGTTGGAGTATACGGGGATTCTGCGAAGCAGGTCCAATCACCAAGAAACGGAGGGCTTAATTAGCAGTCGGCTGTCTTCTAGATTCCGTGACCATCTTCATAGTCGCCTCGAGGCAGTCCCTGCCGATGGGGAGCTCTCCATTAGAATCATTGGGTCTGGGGAACAGGATCTTGATAGAGAAGGCAATGGTTTGGCTGTAGGTCAGGTCAGGGAAGTCCTTTCCCACAATGAGGTTTCACTGCAACCCGTGGCTGCGTCTGGGATGCCGGCCACATCGCTGCCACCAACTTCAGAGAGTCAAGGGGATTCAAGGGCTGAGCGTCTTTCAGGGGAGGGCGTTTCCCAATCTGTAAATGGAACTACAGATGCTGAAGCTGGTGATGGAGTTGGAGCTAACGGAAGGGACTCTTCCTACCAGAGATACGATATTCAGCAGGCTGCTCGCTGGATTGAGCAGGTGTTGCCTTTCTCTTTACTACTGTTGGTGGTGTTCATCCGGCAGCATTTGCAAGGGTTTTTCGTTACAATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTACGGAAGCAAACAGCTCTGAAGGGAGAGAGAAAAATTCCTGTTTTGGTTGGCATTTCCATTGCATTTTCACTTCACGTGATTGGCATTTATTGGTGGTATCAGAATGATGATCTGTTGTATCCGCTGGTCCTGCTTCCTCCAAAAGCTATACCCCCTTTCTGGCATGCTATATTCATCATCATGGTGAACGATACTTTGGTCCGCCAGGCAGCAATGGTACTGAAGTGTATTTTATTGATGTATTCCAAGAACAGCAGAGGCAGAAATTATCGTAAGCAGGGGCAAATGCTGACTTTAGTTGAGTACCTTCTTCTGCTTTACCGTGCGTTGTTGCCAACACCAGTGTGGTATCGTTTCTTTCTGAACAAAGAATACGGGAGCCTCTTTTCATCACTAATGACAGGATTGTATCTAACATTTAAGCTGACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTGTAAAAGCATTGTCACGTAAAGAAGTGCACTATGGAGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGCGATCTTTGTGCCATTTGCCAGGAGAAGATGCATGCACCAATCTTACTTCGTTGCAAACACATCTTTTGCGAGGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTAGTAAAACCTGCAGATCTCAGATCATTTGGTGATGGTTCTACAAGTCTGTTTTTCCAGTTATTCTAA 1530 0.4627 MEKPQFVTNGMMLDFSINNFGGGSSTEFRYRRVRAFSHMDASATNSDMFRAPQGTSNSRRYGILSASNIFQAPLSVLLEYTGILRSRSNHQETEGLISSRLSSRFRDHLHSRLEAVPADGELSIRIIGSGEQDLDREGNGLAVGQVREVLSHNEVSLQPVAASGMPATSLPPTSESQGDSRAERLSGEGVSQSVNGTTDAEAGDGVGANGRDSSYQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPVLVGISIAFSLHVIGIYWWYQNDDLLYPLVLLPPKAIPPFWHAIFIIMVNDTLVRQAAMVLKCILLMYSKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0027 509 Pfam Zinc finger, C3HC4 type (RING finger) 446 489 - -
Dere11g0027 509 ProSiteProfiles Zinc finger RING-type profile. 448 486 IPR001841 -
Dere11g0027 509 MobiDBLite consensus disorder prediction 162 208 - -
Dere11g0027 509 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 48 509 IPR044235 GO:0061630|GO:1904294
Dere11g0027 509 SMART ring_2 448 485 IPR001841 -
Dere11g0027 509 SUPERFAMILY RING/U-box 441 491 - -
Dere11g0027 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 423 496 IPR013083 -
Dere11g0027 509 MobiDBLite consensus disorder prediction 167 199 - -
Dere11g0027 509 ProSitePatterns Zinc finger RING-type signature. 463 472 IPR017907 -
Dere11g0027 509 CDD RING-HC_RNFT1-like 446 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0027 Dere-ChrDere11 320047 328855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0027 39 509 C3H Transcription Factor Family AT5G01960 66.737 0.0 638