LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g0023	ATGGGGAGCGCGGACTTTGACAAGACGAAGTCGCCGAGCACTTATTCCGCTTGTCACGTTCGTCGTCTTTCTGAGATGGCTGCAGATTCTGAAGGTACTTCATCTGCATTTCATCAGTCTATTTCTCAGACTTTTGAGGACACTTCTCTGCATGTTGACCCTTCTGTCCAAATTGCAGTGTGTGCTCTATGCCAAAAGGCCTTATCACCTGATAATGAGATGACAAATGATCTTGCACCCGTTGGTGTATGTGGCGATTGTAAATTTTTATTACTTGAAGATTTTGTGACCCCTGCCCCTAACTTTCAAAGAATGGTTAGGGGAAGATCCAGGTATAGCAGTACTGAATCAATTGGGAATAGTTTATCACAGCAGCTCCCCCATATGGCTAATTCTGTGAGGCAAAATCAATCCTCTGCATCTGTGGAGGATGATCGGCTTGTTGATGGTGATTACCTCGCTTGGCTATTGCAGTATGCTAGTGACCATACTACCCCTAGTGGGTCTCAAAGATACAGGCGGGTTTTCTCTGATACTGATAGTGATGGTTTTGATAATTGGAGTTCTCTTTATGGTGAGAATGAATCAAATGCGAGTGTTAGGCAGTACAGAGTCCCCAATGGTGAGACTGATTCTTTCTCTTTCAGTGCCTATGAAGGTGACTCTGAAGTGTCTATAGATAGACATAGTTTTGTAGGTACAGGAATTATTAATGTACGAGATGAGGGAGATGAGTTTGATAGTGACACTGATATAGATCCAATGCATGCTGGCCTTAGCCATTGGAACTTTGATGATATGGAAGAGGAGGAAGAAGAAGTGGAGGAAGAAGAAGTAGAGGAAGAAGAAGCTGAGGAAGAGGAAAGGGAATGGGAAGTAGCTGAGGCTGAGGAAGCTGAAGCAACTGCCCGTCTTCAAATTTTTTTCACCTCAAGTCCTAGTGAGAGAAGTGGCCCCATGAATTGGGAACGACGGTTTAATTCTCCTGAATCTGAGGGAGTATTTAGCAGGAGAGTCAGGGACAGACAGCAAGCTTACAATGATCACAGCTCCAACTACTTGGGGGAGGCAGATTTACCACCTTATAGTGCAGATTTTGGGGATTACCTTGATGCTAGACAATTTGAAGATCTGCTTGAGCACCTTGCAGACAATGACAGCTCAAGACGAGGAGCACCTCCTGCAGCTGTGTCTTTTGTAAAAAGTCTGCCCCGTGTTGTTATAAGCAAGGAACATGAGAAGTGTGGCGAATTAGTATGTGCCATTTGCAAGGATGCCTTAGCCACAGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTTTATCATACCTGCTGCATTTTGCCATGGTTGAGCACAAGAAATTCTTGCCCCCTTTGTCGTTATGAGCTACCAACAGATGATAAGGATTATGAGGAAGGGAAGCGCAATATTGATGGTAGAAATGAGATCCATGAAGCACAGCAGCTGGATGTGACGGATGACAGTTCCTCTGATGGAGCTGAAGCGAATGAAGCGGATGGTACTCATCAAGGTAGAGTACAACAAAGTGCTCTTGTGAACGTGGTTCCTGTAGTTAATCCTTCTGCAGCAAGGGGTGGTAGAGGAAGATGGTTTTTCCTTGCTGCTGCTCCAATTGTTAGTCTAGTGGGTATTGTTATTGTCTTATGGTTAGGTAACCCTCTAATTGAAGGAAGTAGACAGCTGGGCCACCGCAACTTACCTGGGCAAAATCAGCATCAGGTTCATGTTTCTGCTTCACCGAACCCTCGGGAGGATAGAAGCAGAAGATGGTGGTGCTTTTTCTAA	1809	0.4489	MGSADFDKTKSPSTYSACHVRRLSEMAADSEGTSSAFHQSISQTFEDTSLHVDPSVQIAVCALCQKALSPDNEMTNDLAPVGVCGDCKFLLLEDFVTPAPNFQRMVRGRSRYSSTESIGNSLSQQLPHMANSVRQNQSSASVEDDRLVDGDYLAWLLQYASDHTTPSGSQRYRRVFSDTDSDGFDNWSSLYGENESNASVRQYRVPNGETDSFSFSAYEGDSEVSIDRHSFVGTGIINVRDEGDEFDSDTDIDPMHAGLSHWNFDDMEEEEEEVEEEEVEEEEAEEEEREWEVAEAEEAEATARLQIFFTSSPSERSGPMNWERRFNSPESEGVFSRRVRDRQQAYNDHSSNYLGEADLPPYSADFGDYLDARQFEDLLEHLADNDSSRRGAPPAAVSFVKSLPRVVISKEHEKCGELVCAICKDALATGTEVNQLPCSHLYHTCCILPWLSTRNSCPLCRYELPTDDKDYEEGKRNIDGRNEIHEAQQLDVTDDSSSDGAEANEADGTHQGRVQQSALVNVVPVVNPSAARGGRGRWFFLAAAPIVSLVGIVIVLWLGNPLIEGSRQLGHRNLPGQNQHQVHVSASPNPREDRSRRWWCFF	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g0023	602	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	280	465	-	-
	Dere11g0023	602	MobiDBLite	consensus disorder prediction	471	492	-	-
	Dere11g0023	602	ProSiteProfiles	Zinc finger RING-type profile.	420	461	IPR001841	-
	Dere11g0023	602	MobiDBLite	consensus disorder prediction	493	513	-	-
	Dere11g0023	602	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	380	467	IPR013083	-
	Dere11g0023	602	MobiDBLite	consensus disorder prediction	268	289	-	-
	Dere11g0023	602	MobiDBLite	consensus disorder prediction	471	513	-	-
	Dere11g0023	602	SUPERFAMILY	RING/U-box	400	467	-	-
	Dere11g0023	602	Coils	Coil	264	304	-	-
	Dere11g0023	602	Pfam	Ring finger domain	420	461	IPR001841	-
	Dere11g0023	602	MobiDBLite	consensus disorder prediction	573	594	-	-
	Dere11g0023	602	SMART	ring_2	420	460	IPR001841	-
	Dere11g0023	602	FunFam	E3 ubiquitin-protein ligase RING1-like	381	467	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g0023	Dere-ChrDere11	299808	302627	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g0023	55	602	C3H Transcription Factor Family	AT5G01980	41.786	4.11e-124	374