Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0011 ATGGCTGCTTGTGCTTTGCTCGGTAGTAGCAGTGATGGAGCTGATGTGGACGGCAATGTCAGTCACACAAGCAATGTGAATGCCCGCGGCGGAAGTAAAAGTGGAAGTGGAAGTGGAAGTGCCTCCAACTCTAGCAATATCAGCCCCCCATCTGAGAGAAAGATGGTGAGGAAGAGGATGGCCTCCGAAATGGAAGTTCACGCCGTGCCCGCCAACTCCGCCACGGATTATCTCATGTTTCCCCGTCGGAGTGTAGCCTTCTCGACGCTGAATTCCTCTTTACCCGCTGCAGAAAAAGCAGCCACAACAGCTTCGGCAGCTGCAAGTAATAGTAATTATAACTATCATTATAACTCTTGTTCACGAGATAATGTTCCTATTTCAAACCCCACAGTGACGGTCCCCAACTACTCCACTACCACGCTTCTACCTTCTTCCACCAATCTCACCACCATGACGTCACCGAACTACACTCACCGTCATTGCGGAGAAAGCCTCTCGCTCCATCCTCACTTTCAAACCCTTCAACCCCAAACTCAGACCCAGGACCCTGCGCCCGCTCCTTCAGTGTGTGGATTCTCGGGTTTGCCTCTGTTTCCATCTGAAAGAAATCGAAATAATAGTACCAGTACTGCAACTGTAGACGTTGCTTCAGCGACAAACGCCGACATCGGTCGACCTTCTCCTTCTATGGAAGATACTTCAACCACGGCTTGGATCGACGGCATCCTAAAGGATCTCATCCATAGCTCCACTGGCGTCTCCATCCCTCAGCTCATTAACAACGTCAGGGAGATTATCTATCCTTGCAACCCCAACCTAGCTGTCGTTCTTGAATACAGGCTCCGCCTCCTTACCTCCGCTACTTCTGAATCTATTCCAAACTATGCAGAGAAGAAAAGGACCGAAGCTCCGCCTCCTGTGGTGCCGGTAGCCGTGGGTTTGAACCAGAGGCCCTTCGGTCAGCAAGTGGGACCCTCTTCCGCTGCCATAGTTCCCAACTTGCATATTCCAAATTCTTCAACCGTTGCTGTTTCTCCGGTCGTCATGAATCAGATGTACTCGAATTGGGTAGTGCCTCCGGTGACTGCCCCAACCCACGAGGGGGGCAATCCTTCAGTGGTTACCTTACCACCATCCCCACTATCATCGTCAAACCATCAGGGTTATTCGCCACCGCAGGAGCAGCAATTTCATGAGAAGCAGCAGCAAAACGACAATCAGAATCAGCAACAGGAGGGAGTGTCTTCCCCTTGTGATAACCGAGCAGCAACAACGACGACTGTGGCCGCAGAGATCATCCTTACAAAAAAGAAGAAAGAGGAGATGCGGCAACAGAAGAGAGATGAGGAGGGATTACACCTCCTCACTTTGCTGCTTCAGTGTGCGGAGGCTGTGGCTGCTGATAACTTTGAAGAAGCTAACAAGATGTTGCTGGAGATTTCGCAACTGTCCACGCCGTTCGGTACGTCGGCGCAGCGGGTAGCAGCTTATTTCTCAGAAGCCATATCTGCAAGGCTGGTTAGCTCGTGCTTGGGAATATACGCTACTCTGCCAACGGTGCCTCATAGCCAGAAGATGGTATCGGCATTCCAGGTGTTCAATGGGATTAGTCCTTTCGTGAAGTTCTCGCACTTCACGGCGAACCAAGCTATACAGGAAGCGTTCGAGAGGGAGGAGAGGGTGCACATCATAGATCTAGATATAATGCAGGGGTTACAGTGGCCTGGCCTGTTTCACATTCTGGCTTCAAGAGCGGGTGGACCCCCATACGTGAGACTCACGGGGCTTGGAACCTCCATGGAGGCTCTTGAGGCTACGGGGAAGCGTTTGTCCGATTTTGCAAATAAACTGGGACTTCCCTTTGAGTTCTTTCCGGTGGCTGACAAAGTGGGGAATCTGGACCCCGAGAGGCTTAGTGTAAGCAAGACGGAAGCTGTGGCCGTCCACTGGCTGCAACATTCCCTTTACGATGTCACTGGCTCCGATACAAATACGCTGTGGCTTTTGCAGAGGTTGGCACCTAAAGTGGTGACGGTGGTGGAGCAGGACCTGAGCCACGCGGGGTCTTTCTTGGGAAGGTTTGTGGAAGCCATACACTACTACTCAGCACTATTCGATTCGCTTGGATCTAGCTATGGGGAGGAAAGTGAAGAGAGACATGTGGTGGAGCAGCAGCTTCTGTCCAGGGAGATTCGTAACGTGCTGGCAGTCGGGGGTCCATCAAGGACCGGAGAGCTCAAGTTTCATAACTGGAGGGAAAAGCTTCAGCAGTGTGGATTCAGAGGCATCTCTCTCGCTGGTAATGCTGCTACACAGGCCAGCCTACTCCTTGGCATGTTTCCTTCTGACGGCTATACCTTGGTGGAGGACAATGGCACCCTCAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCTGCTTGGAGACCTCCCTTCCACAATACCACTGCCATCATCCATCATAGCTAG 2475 0.5176 MAACALLGSSSDGADVDGNVSHTSNVNARGGSKSGSGSGSASNSSNISPPSERKMVRKRMASEMEVHAVPANSATDYLMFPRRSVAFSTLNSSLPAAEKAATTASAAASNSNYNYHYNSCSRDNVPISNPTVTVPNYSTTTLLPSSTNLTTMTSPNYTHRHCGESLSLHPHFQTLQPQTQTQDPAPAPSVCGFSGLPLFPSERNRNNSTSTATVDVASATNADIGRPSPSMEDTSTTAWIDGILKDLIHSSTGVSIPQLINNVREIIYPCNPNLAVVLEYRLRLLTSATSESIPNYAEKKRTEAPPPVVPVAVGLNQRPFGQQVGPSSAAIVPNLHIPNSSTVAVSPVVMNQMYSNWVVPPVTAPTHEGGNPSVVTLPPSPLSSSNHQGYSPPQEQQFHEKQQQNDNQNQQQEGVSSPCDNRAATTTTVAAEIILTKKKKEEMRQQKRDEEGLHLLTLLLQCAEAVAADNFEEANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPTVPHSQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRAGGPPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVADKVGNLDPERLSVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGELKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWRPPFHNTTAIIHHS 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0011 824 Pfam GRAS domain family 456 811 IPR005202 -
Dere11g0011 824 ProSiteProfiles GRAS family profile. 446 811 IPR005202 -
Dere11g0011 824 MobiDBLite consensus disorder prediction 202 233 - -
Dere11g0011 824 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 410 806 IPR005202 -
Dere11g0011 824 MobiDBLite consensus disorder prediction 1 61 - -
Dere11g0011 824 MobiDBLite consensus disorder prediction 369 423 - -
Dere11g0011 824 PRINTS Pollen allergen Poa pI signature 208 222 - -
Dere11g0011 824 PRINTS Pollen allergen Poa pI signature 100 117 - -
Dere11g0011 824 PRINTS Pollen allergen Poa pI signature 58 77 - -
Dere11g0011 824 MobiDBLite consensus disorder prediction 14 51 - -
Dere11g0011 824 MobiDBLite consensus disorder prediction 376 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0011 Dere-ChrDere11 139874 142594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0011 437 812 GRAS Transcription Factor Family AT3G54220 86.579 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere11g0011 GRAS 1.4e-124 CL0063