Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0009 ATGGGTAGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATCAATAGGCAAGTGACTTTCTCAAAAAGAAGGAACGGTTTGCTGAAGAAAGCTTATGAACTGTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTGGTCGTGGCAAGCTCTATGAATTCGGAAGTGCTGGTTTCTCTTTAATTTTTGTTGTGTTTTCCTCCTTCCTCATATGCCCACTTGTAGGCCCAAGGTCCTCCTTGTTTTACTTCAGGTTCTCGGCTTCTCTCTCCTCCTCCAGCCATAGTCTCTCTCTCTTCCTTCGTCTTCTCCTTCCTTCTTCTTTTTCTCCTTTCCTCCTCCTCTATTCACCTCTACCTGCAGTGCTCAGAATAGAGCAGGCCACTTCTTCTTTTCCTCTTCTTCTTCTTCTTCTCCTTCTTTCTTCTTCTTCTTCTCTCTCTCCTCAGCCCATGACTACACGAGCTATGGCACGCCTTTCTCTCCCCTTTCTCCCTCCTTTCTTCTTCATGTCATCAGCTTCGCCTCTCTTCTCTAGGTCTATGGCTTCTCTCGGTCCATGGCATCTCTACTTCTTCTCTTCTTCCCTCTCGGTCCATGGCTTCTTTCGGCTCACTCCTTCTCCCTGGTCCGTTCTCCTCTAA 654 0.4679 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGFSLIFVVFSSFLICPLVGPRSSLFYFRFSASLSSSSHSLSLFLRLLLPSSFSPFLLLYSPLPAVLRIEQATSSFPLLLLLLLLSSSSSLSPQPMTTRAMARLSLPFLPPFFFMSSASPLFSRSMASLGPWHLYFFSSSLSVHGFFRLTPSPWSVLL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0009 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere11g0009 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere11g0009 217 Gene3D - 13 71 IPR036879 GO:0003677|GO:0046983
Dere11g0009 217 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere11g0009 217 CDD MADS_MEF2_like 2 62 IPR033896 GO:0000977|GO:0045944
Dere11g0009 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere11g0009 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere11g0009 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere11g0009 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
Dere11g0009 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere11g0009 217 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0009 Dere-ChrDere11 93978 100334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0009 1 77 MADS-box Gene Family AT2G45650 77.922 6.19e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere11g0009 SRF-TF 9.7e-27 No_clan