Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g0001 ATGGAGGGCAGTTTAAGAAGTGATTTGGAATGCCAGAGGATAATGGATGGGAAGACAAGTAACAGGAATTGTTTAGGAAAGGAAATTCCATTATGTTGCATGAAGTCTAAGGCTACTGTTGTTTCAGGGTGGTTCTCAGGATCCCAGTCTTGCTTCGGGGAACTGAGTGCCATTTATTTTAACAACCCCATATGGCTAGGAGAAGCTCACTCAATCAAAGTCGAAAAGATCCTGTACAAGGAGAAGTCTGAGTACCAAGAGGTCTTGGTTTTTGAGTCGTCAACATATGGGAAAGTACTTGTACTTGATGGGATTGTTCAGGTGACCGAGAAAGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCTCTTTGTTCAATTCCATCCCCCAAAACAGTTTTAGTTGTTGGTGGTGGAGATGGCGGGGTTCTAAGGGAAGTATCCCACCACAAGTTAGCCGTTGGATTTGATGATCCTCGAGTACACTTGAATGTTGATGATGCTGTTGAATTTCTTCGATGTGCCCCTGAAGGAAAGTATGATGCCATCATTGTTGATTCATCTGATCCTGTGGGTTCTGCTCAGGAACTTGTAGAGAAGCCATTTCTTGATACTATAGCTAAAGCATTAAGGCCTGGTGGAGTGCTTTGCAATATGACAGAAAGTATGTGGCTTCATATGCACCTTATTCAAGAGATGATGTCCATGTGTCAAGAGATATTCAAAGGCTCAGTACATTATGCATGGGTAAGTGTTCCAACATATCTGAGTGGTGTGATCGGTTTTCTTTTATGCTCCTTGGAGGGGTCACTTGTTGATTTTATAAATCCCATGAACCCCATCGAGATGGTTGAAGGTACGTTCAAGCATAAAAGAGAACTTAAATTCTATGATTCACAGATGCACTCAGCTGCTTTTGTTAAGAGGGAGGTGAGCTTACTCCGCGACACACAATCTATGAGACTCGTGCTTCTATTGGTCCTAGCTGAAAAGTCTGCTGCACTCCTTAATTTTCACTTGGACCTTGTTAGCCTGGAAGTTGCTAGCAAGATACAATTGAAAGCATTAGCAGAAGAGATGGCAGTAATTAACAAAGGATTACGAAAGGTTAAACAGGAGCTTGCAGCATCTGAAACTGATGGCTCTGTGGCTGAGACTTTTCGTAAGACACTGAAAGAATTTGTTGATAGTGCTGAGTCGAGGGTGCCGTGA 1215 0.4263 MEGSLRSDLECQRIMDGKTSNRNCLGKEIPLCCMKSKATVVSGWFSGSQSCFGELSAIYFNNPIWLGEAHSIKVEKILYKEKSEYQEVLVFESSTYGKVLVLDGIVQVTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREVSHHKLAVGFDDPRVHLNVDDAVEFLRCAPEGKYDAIIVDSSDPVGSAQELVEKPFLDTIAKALRPGGVLCNMTESMWLHMHLIQEMMSMCQEIFKGSVHYAWVSVPTYLSGVIGFLLCSLEGSLVDFINPMNPIEMVEGTFKHKRELKFYDSQMHSAAFVKREVSLLRDTQSMRLVLLLVLAEKSAALLNFHLDLVSLEVASKIQLKALAEEMAVINKGLRKVKQELAASETDGSVAETFRKTLKEFVDSAESRVP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g0001 404 Gene3D Spermidine synthase, tetramerisation domain 35 107 IPR037163 -
Dere11g0001 404 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 58 308 IPR029063 -
Dere11g0001 404 Pfam Spermine/spermidine synthase domain 152 273 - -
Dere11g0001 404 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 42 268 IPR030374 -
Dere11g0001 404 Hamap Polyamine aminopropyltransferase [speE]. 64 319 IPR001045 GO:0003824
Dere11g0001 404 Coils Coil 354 374 - -
Dere11g0001 404 Pfam Formin Homology 2 Domain 328 403 IPR015425 -
Dere11g0001 404 Pfam Spermidine synthase tetramerisation domain 67 110 IPR035246 -
Dere11g0001 404 SUPERFAMILY Formin homology 2 domain (FH2 domain) 324 402 - -
Dere11g0001 404 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 134 147 IPR030373 -
Dere11g0001 404 PANTHER SPERMIDINE/SPERMINE SYNTHASE 152 310 IPR001045 GO:0003824
Dere11g0001 404 Gene3D Vaccinia Virus protein VP39 108 311 IPR029063 -
Dere11g0001 404 Gene3D Formin, FH2 domain 312 404 IPR042201 -
Dere11g0001 404 FunFam Spermidine synthase 1 35 107 - -
Dere11g0001 404 CDD AdoMet_MTases 160 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g0001 Dere-ChrDere11 9416 10970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g0001 317 403 FH2 protein (formin) Gene Family AT5G07780 60.674 9.00e-23 98.2