Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g2053 ATGAAATCATCATCATCAGAGCCCGCATTCCATTCCGAACTCCATAGTGGTGGTGGTGGTGGTCCTCTCCTTCGGAAATCCTTTCCTTTTCTCGTGAAATTTCGCTTTTTGTTTCGCTGCTCCGCCTCTGATCTCTTTTCAAGCACCAAGTATTATTCACCAGTAGGAACTTCACCCATGAGTTCAGGATTCAGCATAATTATATATTTACTATTGACTCTCATACATGGAGCATCAACGGAAGTAGCTTTAGAACCTGATGTTGTGAAAATTGGAGCTATTTTCACATTTAAAACTATAAACGGACGAGTTTCTAAAATTGCCATCAAAGCTGCAGAGAAAGATGTGAATTCCGATCCTCGCATTCTTGGTGGACGCAAATTGTCCATAAGCCTGCACGATTCCAACTTCAGCGATTTTCTTGGCTTTATTGGGGCGCTCAAGTTCTTGGTGAGGGACACAGTAGCTATTATCGGTCCACAAAATTCAGTAATGGCCCACGTACTCTCGCATCTTGCAAATGAACTCCATGTTCCTCTTCTGTCATTCACAGCTCTGGATCCCACCCTGTCGCCTCTGCAGTACCCTTATTTTGTGCAAACAGCGCCCAGTGATCAATTCCAGATGACTGCCGTTGCGGACATGATTAGCTATTTCGGTTGGAGAGAGATTATTGCTGTTTACAGTGATGATGATCAAAGTCGAAATGGCATAACTGTATTGGGGGATAAACTTGCAGAACGGCGCTGTAAGATATCTTACAAAGCTATACTGCCCCCTGATCCAACTGGTACTCGAAGTGATATAACAGCTCAGCTGACCAAGGTTCAAAGTATGGAGTCTAGAGTGATTGTTCTAAACACCTACTCCCAAACAGGTCTTTTGGTTGTTGATGTTGCTCACAAATTAGGAATGATGGGTAAAGGGTATGTCTGGATAGCTACTACTTGGTTATCAACAGTTTTAGATTCAACTTCACCACTTCCTTTGCCTATTTCTTACTCAATCGAGGGAGTTCTTACCCTTCGCCCTCACACCCCTCAATCAAAAAGAAAACAAGCCTTTATGTCCAGGTGGAAACAGATGATTAATGGTTCAATTGGGTTGAATCCATATGGACTCTATGCTTATGATTCTGTTTGGATCATTGCTCTTGCATTGAAATCATTTTTTGATCAAAATGGTACCATTTCATTCTCTAATAATACAAATTTAAGCGGTATGAGAGGAGAGACTTTGGATCTTGGCCCATTGAGCATTTTTGATGGAGGGAAACAATTACTTGATAACGTATTGCGTACAAATATGACTGGATTGACAGGACCTATTCAATTTGGCTCAGATAGATCCCCCTTAAATCCATCATATGACATCCTTAATGTAATCAATGGTGGTTATAGGAAGATCGGGTACTGGTCTAATTATTCTGGGCTATCAGTTATTACTCCCGAGAAACTACATGCAAAGCTTGCCAACCGATCAATTTTAAACCAGCATCTATCCCATATAAAATGGCCTGGTGGTACAACGGAAAAGCCTCGTGGATGGGTTTTCCCAAATAATGGAAGGCAACTAAGAATTGGAGTTCCCAACCGAGTTAGTTATCAGAACATTGTGTCACAAATAAATGGTACCAATATAGTTCAAGGATACAGCATAGATGTGTTCCTAGCTGCCATAAAATTGCTACCATATGCAGTTCCATATAGGTTTGTTATGTTTGGAGATGGACATAAGAACCCCAACTACTATGACCTTGTCAATATGATTACTTCTGATGTTTTCGATGCTGCTGTAGGTGACATTGCAATTGTCACTGACCGAACAAAGATTGTGGATTTTACGCAACCATACATAGAGTCGGGACTAGTTGTAGTTGCAAAAGTGAAAGCATTGAAGTCAAGTGCTTGGGCTTTCTTACGACCATTTACTCCATTAATGTGGGGTGTCACAGCTGTTTTCTTCATCATTGTTGGAGCAGTTGTGTGGATTCTTGAACATAGAACAAATGATGAGTTTCGGGGGCCTCCTAGGAAACAAATTGTTACAATTCTTTGGTTTAGCCTCTCCACAATGTTCTTTGCTCACAGAGAAAACACAGTTAGTGCACTTGGTCGTATTGTACTAATCATTTGGCTTTTTGTGGTTTTGGTAATCAATTCAAGCTATACAGCAAGCCTAACATCTATTCTCACTGTGCAACAACTTTCCTCACCCGTAACAGGAATTGATACCTTGATAGCCAGTAATGAACCAATAGGATTTCAGGTAGGGTCATTTGCTGAAAGCTATCTTACTCAGGAACTCAACATCCCAAAATATAGGCTTATTCCGCTTGGCTCGCCAGAAGAATATGCTATCGCTCTTGAGAGGGGAACTGTTGCTGCTGTTGTTGACGAACGACCATATGTAGAGCTCTTCATGTCAGATCACTGCAAATTCTCCATTAGAGGCCAAGAGTTTACCAAAAGTGGATGGGGATTTGCATTCCCAAAGGACTCTCCTTTATCCTTTGATATGTCAACTGCTATTCTGACTCTATCTGAGAATGGTGAACTCCAGAAGATTAATGAAAGGTGGCTCTCAGAAAAGGCTTGCGGATTTCATAGTACTGAGTATGGATCTGAGCAACTTCAGTTAGAAAGCTTTTGGGGCCTGTTTCTGTTATGTGGGATAGCTAGTTTCCTAGCGCTTCTTGTCTATTTCGTCCTGATGGTTCTCCGATTCAGTCGAGACTTCCCCAGGAATGATGGTCCTTCTAATGGTGGCCGCTTGCACTCTGCACGTATCCAGACATTTCTAAATTTTGTTGATGAAAAAGAAGACTTATCACAAAGAAAGCTTAAAAGAAAACGCAAGGATATTACATAA 2871 0.4124 MKSSSSEPAFHSELHSGGGGGPLLRKSFPFLVKFRFLFRCSASDLFSSTKYYSPVGTSPMSSGFSIIIYLLLTLIHGASTEVALEPDVVKIGAIFTFKTINGRVSKIAIKAAEKDVNSDPRILGGRKLSISLHDSNFSDFLGFIGALKFLVRDTVAIIGPQNSVMAHVLSHLANELHVPLLSFTALDPTLSPLQYPYFVQTAPSDQFQMTAVADMISYFGWREIIAVYSDDDQSRNGITVLGDKLAERRCKISYKAILPPDPTGTRSDITAQLTKVQSMESRVIVLNTYSQTGLLVVDVAHKLGMMGKGYVWIATTWLSTVLDSTSPLPLPISYSIEGVLTLRPHTPQSKRKQAFMSRWKQMINGSIGLNPYGLYAYDSVWIIALALKSFFDQNGTISFSNNTNLSGMRGETLDLGPLSIFDGGKQLLDNVLRTNMTGLTGPIQFGSDRSPLNPSYDILNVINGGYRKIGYWSNYSGLSVITPEKLHAKLANRSILNQHLSHIKWPGGTTEKPRGWVFPNNGRQLRIGVPNRVSYQNIVSQINGTNIVQGYSIDVFLAAIKLLPYAVPYRFVMFGDGHKNPNYYDLVNMITSDVFDAAVGDIAIVTDRTKIVDFTQPYIESGLVVVAKVKALKSSAWAFLRPFTPLMWGVTAVFFIIVGAVVWILEHRTNDEFRGPPRKQIVTILWFSLSTMFFAHRENTVSALGRIVLIIWLFVVLVINSSYTASLTSILTVQQLSSPVTGIDTLIASNEPIGFQVGSFAESYLTQELNIPKYRLIPLGSPEEYAIALERGTVAAVVDERPYVELFMSDHCKFSIRGQEFTKSGWGFAFPKDSPLSFDMSTAILTLSENGELQKINERWLSEKACGFHSTEYGSEQLQLESFWGLFLLCGIASFLALLVYFVLMVLRFSRDFPRNDGPSNGGRLHSARIQTFLNFVDEKEDLSQRKLKRKRKDIT 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g2053 956 SUPERFAMILY Periplasmic binding protein-like II 502 863 - -
Dere10g2053 956 FunFam Glutamate receptor 636 766 - -
Dere10g2053 956 SMART AABind_6 524 864 IPR001638 -
Dere10g2053 956 FunFam Glutamate receptor 762 865 - -
Dere10g2053 956 Gene3D - 637 766 - -
Dere10g2053 956 FunFam Glutamate receptor 520 636 - -
Dere10g2053 956 SMART GluR_14 526 863 IPR001320 GO:0015276|GO:0016020
Dere10g2053 956 Gene3D - 520 636 - -
Dere10g2053 956 PIRSF IGluLR_plant 59 955 IPR017103 -
Dere10g2053 956 FunFam Glutamate receptor 204 363 - -
Dere10g2053 956 Gene3D - 788 868 - -
Dere10g2053 956 CDD PBP1_GABAb_receptor_plant 90 480 IPR044440 -
Dere10g2053 956 Gene3D - 107 453 - -
Dere10g2053 956 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 89 923 IPR015683 -
Dere10g2053 956 Pfam Bacterial extracellular solute-binding proteins, family 3 545 862 IPR001638 -
Dere10g2053 956 Pfam Receptor family ligand binding region 107 462 IPR001828 -
Dere10g2053 956 CDD GluR_Plant 523 861 - -
Dere10g2053 956 SUPERFAMILY Periplasmic binding protein-like I 85 517 IPR028082 -
Dere10g2053 956 Pfam Ligand-gated ion channel 863 893 IPR001320 GO:0015276|GO:0016020
Dere10g2053 956 Gene3D - 204 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g2053 Dere-ChrDere10 34181410 34186448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g2053 64 954 Ion Channels AT2G17260 61.905 0.0 1134